Bacillus cabrialesii: EFK13_07485
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Entry
EFK13_07485 CDS
T08101
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcab
Bacillus cabrialesii
Pathway
bcab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EFK13_07485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcab03400
]
EFK13_07485
Enzymes [BR:
bcab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EFK13_07485
DNA repair and recombination proteins [BR:
bcab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EFK13_07485
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UQE80400
LinkDB
All DBs
Position
complement(1439736..1441571)
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AA seq
611 aa
AA seq
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MAFTMQPVLTSSPPKGADWRYEVKYDGYRCVLRIHSAGVTLTSRNGLELNSTFPEITQFA
KSAFQHMEKDLPLTLDGEIVCLVNPCRADFEHLQVRGRLKKPDKIQESANARPCCFLAFD
LLERSGVDVSSLSYLERKQSLYDFMSAAKLPASPDPYARETIQYIPCYDHFDSLWEMVTK
YDGEGIVAKKTTSKWLKKKRSPDWLKYKNFKHAYVCITGFNPNNGFLTVSVLKNGVMTPI
ASVSHGMRDEEKSAIREIMEQHGYQTPSGEFTLEPSICATVQYLTILQGTLREVSFVGFE
FHMDWTECTYAQVMRRSKPVHPKLQFTSLDKIIFEKNKKTKEDFIQYVIEASDYLFPFLN
NRAVTVIRYPHGSGSESFFQKNKPDYAPDFVQSFCDGSHEHIICEDMSTLLWLANQLSLE
FHVPFQTIKSRRPAEIVIDLDPPSRDDFLMAVQAANELKRLFDSFGITSYPKLSGNKGIQ
LYIPLSPEAFTYEETRQFTQLIAEYCTNAFPELFTTERLIKNRHGKLYLDYLQHAEGKTI
ICPYSTRGNELGTVAAPLYWHEVQSSLTPAMFTIDTVIDRIKKQGCPFFDFYRNPQDEPL
SAILHQLKKKS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttaccatgcagcccgtccttacttcgtcaccgccaaaaggagcagactggcgt
tatgaagtaaaatatgacgggtaccgctgtgttctccgtatccattcagcgggtgtgact
ttaactagcagaaatggtttggagcttaacagcaccttccctgaaatcacgcaattcgcc
aagtcagcctttcagcatatggaaaaggatcttccgctgacgctcgatggggaaatcgta
tgtttggtgaatccttgccgtgcagattttgaacaccttcaagtgcgggggcgtttgaaa
aaaccggacaagattcaggaatcggcaaacgcgcgtccgtgctgctttctcgcctttgat
cttttagagcgaagcggagtggatgtatcgtctctttcgtatctggaacggaaacaatcg
ctgtacgatttcatgtctgctgcaaagcttcctgcgtctccagacccttacgctagggaa
accattcagtatatcccctgctatgatcattttgattccctttgggagatggtcacaaaa
tatgacggagaaggaattgtagcaaagaaaacaaccagcaaatggcttaaaaagaagcgg
tcgcccgattggctcaaatataaaaattttaaacatgcttatgtttgtataacaggattc
aaccccaacaatggatttttgacagtgtctgtgttaaaaaacggtgttatgacaccgatt
gcctctgtctcgcacggaatgcgcgatgaggaaaaaagcgctatacgcgaaattatggaa
cagcacggatatcaaacaccttcaggcgaatttacgcttgaaccatcaatttgtgcaacc
gttcaatacttaacgattctccaaggcacattaagagaggtatcatttgtcggtttcgag
ttccatatggactggaccgaatgcacatatgcgcaagtcatgcgccgctcaaaaccagtc
catccgaagctgcaattcacaagcctggataaaatcatatttgaaaagaataaaaaaaca
aaagaagattttattcagtacgtgattgaagccagtgactacttgttcccatttctgaat
aaccgtgctgtcaccgtcatccgctatccgcatggatcagggagcgaatcgtttttccaa
aaaaataagccggactatgcgccggattttgttcaatctttctgtgatggaagccatgaa
catattatctgcgaagatatgtctacactattatggcttgccaatcagctttctttggag
tttcatgttccttttcaaaccattaaaagcagacgcccggctgagattgtcattgatttg
gacccgccttcccgagatgattttctcatggccgtgcaggccgcaaatgaactgaagcgg
ctgtttgactcttttggcatcacgtcatatccgaagctgtccggcaacaagggcatccag
ctttatattcccttgtcccctgaggcatttacgtatgaagaaacacgccaatttacacag
ctgatcgcagaatactgcaccaatgcatttccagagctctttaccacagaacgtttgatt
aaaaacaggcacggcaagttgtatctcgattatttgcagcatgcagaaggaaaaacgatt
atctgcccctattcaacaagaggaaacgagcttggcactgtcgcagcaccgctctattgg
cacgaggtacaatcatccttaacacccgctatgtttacgatcgataccgtaatcgaccgg
attaagaagcagggctgccctttttttgatttttaccgcaacccgcaagacgaacctctt
agcgccattttacatcaattaaagaaaaagagctga
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