Bergeyella cardium: DBX24_01725
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Entry
DBX24_01725 CDS
T06387
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcad
Bergeyella cardium
Pathway
bcad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DBX24_01725 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcad03400
]
DBX24_01725 (mfd)
Enzymes [BR:
bcad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DBX24_01725 (mfd)
DNA repair and recombination proteins [BR:
bcad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DBX24_01725 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Choline_kin_N
UB2H
Motif
Other DBs
NCBI-ProteinID:
QHN64699
UniProt:
A0A6P1QSE0
LinkDB
All DBs
Position
complement(373638..377057)
Genome browser
AA seq
1139 aa
AA seq
DB search
MKKINESLLPELLRRDFGKDIFEGLSTHHYINVKGSAGSVPSLIAAELFTVQNKTLLFIT
DDKEAAFYITSEMENLVGEERVLYFPETHLEPYQIEKTQNANIVLRTEVLNKILLSSEPK
VIVAHSGALCEKVMKKEDFKAISHKIKVGEQLDFNFTEELLHQFNFNPTDFVSEPGEFSV
RGGIVDVFSYSNEKPYRISFFGNEVESIREFDIETQLSVGKVEEFELVSNMNFAVVGKRV
PFLDILPPDTLIITQQAYATFNKIKSFYHQSLEKFGALSEAINHSHPEELFVSEEEFTQH
FQRFKVVDFSAQPLSEKHLGDANRMELQLSQTPQPSFNKNFEMLIQDLEDKLHHQYSVWI
SFSNEKQRERLQNIFEEKEKNIPFQSFTSELHEGFIDTSSRISVYTDHQIFDRYQRFKPK
NTFAKSEQLTLKDLMSLKIGDYITHIDHGIGKFMGLVKVNNDGNIQECFKLSYKNGDLLY
VSIHSLHKISKYNGAEGKEIVLSKLGSTAWKSLKQKTKAKVKQIAFDLIKLYAKRKAAKG
FAFTPDTYLQNELEASFIYEDTPDQEKATIEVKKDMEAETVMDRLICGDVGFGKTEVAIR
AAFKAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVNISYLNRFRTTKQKNETLKGLE
EGKIDIVIGTHQLVSDKVKFKDLGLLIIDEEHKFGVSVKDKLKTLRTNIDTLTLTATPIP
RTLQFSLMAARDLSVIKTPPPNRQPVDTQLIGFDEEMLRDAISYEIQRDGQVYFINNRIE
NLQEIAGLIQRLVPDARVITGHGQLDGKELESRILDFMEGKYDVLVSTTIVESGVDVPNA
NTIFINDAQRFGMADLHQMRGRVGRGNRKAFCYLITPPMDMMTPDARKRLEAVEQFSDLG
SGFQIAMKDLEIRGAGDLLGAEQSGFINEMGFDTYQKIMQEALEELQNDEQFEQYFENEE
DRKKLFNSKKEVNIDTDLELMLPDDYVQSTEERLLLYQRLAEIETIEELHSFQAQLIDRF
GDLPQEAINLLKSVELKWLSADIGLERLIVKKGVFLGYLPQNPQDKFYRSEKFAHILNYL
SQNPTSAVLKQKDTPEGTQLIIRKEKVKSIEELNDLLHTVASGARLPADELSRSTAGTL
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaataaatgaatctcttctgccagagcttttaagaagagactttggaaaggat
atttttgaaggattatctactcatcattatattaatgtaaaggggagtgcgggttctgtg
ccttcgcttattgctgcagagctttttacggttcagaataaaactttgctcttcattact
gatgataaggaagcggcattttacatcacttctgaaatggagaatctggtgggagaggag
cgagtactctatttcccagagactcaccttgagccttatcagattgagaaaacacagaat
gcaaacatcgtattgcgaacggaagtactcaataaaatactcttgagcagcgagccaaaa
gtcattgtagcacattcaggagcgctctgcgagaaagtaatgaaaaaagaagactttaaa
gcaatctcacataagataaaggtaggcgagcagttggattttaactttacagaagaactt
ctgcatcagtttaattttaacccgaccgactttgtttccgagcctggtgagttctccgta
cgaggagggattgtagatgtattttcttattccaatgaaaaaccctaccgcatctctttc
tttgggaatgaagtggagagcattagagagtttgatatagaaactcagctttccgtaggc
aaggtagaggagtttgagctggtttctaatatgaactttgcagtagtaggaaagcgagtg
cctttccttgatatactcccgccagatacccttatcatcacccagcaggcttatgcaact
tttaataaaatcaagagcttctatcatcaatcccttgaaaaattcggcgcgctaagtgag
gctataaatcatagccatccagaggagctgttcgtctccgaagaagaatttacccagcac
ttccagaggtttaaggtggtagatttctctgctcagcctctttcagaaaagcatttgggt
gatgctaatcgtatggaattacagcttagccagacgcctcagccgagttttaataaaaac
tttgagatgcttattcaggatttggaagacaagctgcatcatcagtattccgtctggata
tctttctccaacgaaaagcaaagggaaaggcttcaaaacatctttgaagagaaggagaag
aatatccctttccagagctttacctccgagctccacgagggctttatcgataccagctct
cgcatttctgtgtataccgaccatcagatttttgataggtaccaacgctttaagccgaag
aatacctttgctaaatcagaacagcttaccctgaaagatttgatgtctcttaaaataggc
gattatattacccatatagaccacggcattgggaagtttatgggtcttgtaaaggtgaat
aatgacggcaacatacaggaatgttttaagctctcgtataagaatggagatttgctctat
gtaagcatacactctttgcacaagatttctaaatataatggcgccgaaggaaaggaaatc
gtcctttcaaagctaggttctaccgcttggaagtcattaaaacaaaagaccaaggcaaag
gtaaagcagattgcctttgacctgataaaactctatgcaaagcgaaaggctgccaagggc
tttgcttttacccccgatacctatcttcaaaacgagcttgaagccagctttatctacgaa
gatacgcccgaccaagagaaagctaccatagaagtaaaaaaagatatggaagccgaaacc
gtgatggacaggctcatctgtggagatgtgggctttggtaaaaccgaagtggctattcgt
gcggcattcaaagctgcaaccgatggtaagcaagtcgcgatactcgtgcctacaaccata
ctcgcattccagcattataggagttttaaggaaaggctgaaagactttcccgtaaatatc
tcttacctcaaccgttttcggacgacaaagcagaaaaatgaaaccctgaaaggcttggaa
gagggaaagattgatatcgttatcggtacgcatcagttggtctcagataaagtgaagttt
aaagacttagggcttctcatcatagatgaggaacataagtttggtgtatccgtaaaggac
aaactaaaaaccctccgtaccaatatagatacgctcacccttaccgccactcctatccct
cgcacgctacaattctccctgatggcagccagagacctttctgtcattaaaactccgcca
cctaatcggcagccagtagatactcagctcataggctttgatgaagagatgctgagagat
gccatatcctacgaaatacagagagatgggcaggtgtatttcattaataatagaatagaa
aacttgcaggaaatcgcagggcttatccaaaggcttgtccctgatgcaagggtcattaca
ggacacggtcagctcgatggaaaggagctcgaaagccgtatcctcgattttatggagggt
aagtacgatgtactcgtctctaccaccatcgtagaaagtggggtagatgtaccgaatgca
aataccattttcattaatgatgctcagcgcttcggtatggcagacctccaccagatgcga
ggccgtgtgggtaggggtaaccgaaaggctttctgctacctcatcactccaccgatggat
atgatgactcccgatgcccgcaaaagacttgaggccgtagaacagttctccgaccttggg
agtggtttccaaatcgcaatgaaagaccttgaaatccgcggagcaggggacctgctcggt
gccgagcagagtggttttatcaacgagatgggctttgatacttatcagaagattatgcag
gaggcattggaagagcttcagaatgatgagcagtttgagcagtattttgagaatgaagaa
gaccgaaagaagctcttcaactctaaaaaagaggtcaatatagataccgacctcgagctg
atgctccctgatgattatgtacaaagtaccgaagagcggctcctgctctaccaaagactg
gcagagatagagactatagaggagcttcatagcttccaagctcagctgattgaccgcttt
ggagacctgccacaagaggccatcaacctcctgaaatcggtagagcttaagtggctttcg
gctgatattggcttagagcggcttattgtaaagaaaggggtattccttggatatctaccc
caaaatccgcaggacaaattctaccgcagcgagaagtttgcccatatcctcaactacctt
agccaaaaccctacctcagccgttctaaaacaaaaagataccccagaaggtacccagcta
ataataagaaaagagaaggtaaaaagcatagaagaactcaatgacctccttcacaccgta
gccagtggagcacggctaccagccgacgaacttagccgtagcacagcaggcacactgtag
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