Paraburkholderia caribensis: K788_0000369
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Entry
K788_0000369 CDS
T04141
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bcai
Paraburkholderia caribensis
Pathway
bcai02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K788_0000369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcai03021
]
K788_0000369
Transcription machinery [BR:
bcai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K788_0000369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GSH-S_ATP
GerE
Motif
Other DBs
NCBI-ProteinID:
ALL68609
UniProt:
A0A0P0RIK9
LinkDB
All DBs
Position
2:2572978..2575035
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AA seq
685 aa
AA seq
DB search
MANSMTKKLNEVSVDDDASPSEEAAATPATGKVEKVKARDRRAKEKALLKDAFASSQPGT
VEELEERRSKLRALIKLGKERGFLTYGEINDHLPDNFTETEAIEGIISTFNDMGVAVYEQ
APDAETLLLNDNAPNASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTRE
GEIEIAKRIEDGLKHMVMAISACPTTIADILAMAERVANEEIRIDELVDGLIDANAEDTD
GFSEQEAEAIENEEEEEEEADEEEEEDDDGAAQATANAAQLEELKRMSLEKFAMISEWFD
KMRRAFEKEGYKSKSYLKAQETIQEELMMIRFTARTVERLCDTLRAQVDEVRQVERQILH
TVVDKCGMPRAEFIARFPGNETDLEWADKIVTENHAYSAILSRNVPAIREQQQRLLDLQA
RVVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQ
ILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTV
APADAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQ
IEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcgaactccatgacgaaaaagctgaacgaagtatccgtcgatgacgacgcatccccg
agcgaagaagcagccgcaactcccgctacgggcaaggtcgaaaaggtcaaggcacgcgac
cgtcgcgcaaaggagaaggcgctgctcaaggacgcgttcgcgtcttcgcagcccggcacc
gtcgaggagctcgaagagcgccgctcgaagctgcgcgcgctgatcaagctcggcaaggag
cggggcttcctgacctacggcgagatcaacgaccacctcccggacaacttcacggaaacc
gaggcgatcgaaggcatcatcagcacgttcaacgacatgggcgtcgccgtctacgaacag
gcgcccgatgccgaaaccctgctgctgaacgacaacgcccccaacgcttcgtcggacgat
gaagtcgaagaggaagcggaagtcgcgctctctaccgtcgattccgagttcggccgcacg
accgacccggtgcgtatgtacatgcgcgagatgggcacggtcgagctgctcacgcgcgaa
ggcgaaatcgaaatcgccaagcgcatcgaagacggcctgaagcacatggtgatggccatc
tccgcctgcccgaccacgatcgccgacattctcgccatggccgagcgcgtcgcgaatgag
gagatccgcatcgacgaactcgtcgacggcctgatcgacgcgaacgccgaagataccgac
ggcttctccgaacaggaagccgaagcgatcgagaacgaggaagaagaagaggaagaggcg
gacgaggaagaagaggaagacgacgacggcgccgcgcaggcgacggccaacgccgcccag
ctcgaagaactgaaacgcatgtcgctcgaaaagttcgcgatgatcagcgaatggttcgac
aagatgcgccgcgcgttcgaaaaggaaggctacaagtcgaagtcctacctgaaggcgcag
gaaaccattcaggaagagctgatgatgatccgcttcaccgcgcgtaccgtcgagcgtctg
tgcgacacgctgcgcgcgcaggtggacgaagtgcgtcaggtcgagcgtcagatcctgcat
acggtggtcgacaagtgcggcatgccgcgtgcggagttcatcgcgcgtttcccgggcaac
gagacggatctcgaatgggccgacaagatcgtcaccgagaatcacgcgtatagcgcgatc
ctgtcgcgtaatgtgccggctatccgcgagcagcagcagcgtctgctcgacttgcaggcg
cgcgtcgtgctgccgctgaaggacctgaaggaaaccaaccgccagatggcggcgggcgaa
ctgaaggcgcgtcaggcgaagcgcgaaatgaccgaggcgaatctgcgtctcgtgatctcg
attgcgaagaagtacacgaaccgtggcctgcagttcctggatctgattcaggaaggcaac
atcggcctgatgaaggccgtggacaagttcgaatatcgccgcggctacaagttctcgacg
tacgcgacgtggtggatccgtcaggccatcacgcgttcgattgcggaccaggcgcgcacc
attcgtattccggttcacatgatcgagacgatcaacaagatgaaccgcatctcgcgtcag
attctgcaggaaaccggcctcgagccggacccggcaacgctggccgagaagatggagatg
ccggaagacaagatccgcaagatcatgaagatcgcgaaagagccgatctcgatggaaacg
ccgatcggcgacgacgacgattcgcatctgggcgacttcatcgaggacaacaacacggtc
gcgccagccgacgccgcattgcacgccagcatgcgcgatgtcgtgaaggacgtgctcgat
tcgctgacaccgcgcgaggcgaaggtgctgcgcatgcgtttcggtatcgaaatgagcacg
gaccacacgctggaagaagtcggcaagcagttcgacgtgacgcgtgagcgtatccgtcag
atcgaggcgaaggcgctgcgcaagctgcgtcacccgagccggtcggacaagctgaagtcg
ttcctcgaaggcaactga
DBGET
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