Bradyrhizobium canariense: BcanWSM471_29895
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Entry
BcanWSM471_29895 CDS
T08760
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcan
Bradyrhizobium canariense
Pathway
bcan03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BcanWSM471_29895 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcan03400
]
BcanWSM471_29895 (ligD)
Enzymes [BR:
bcan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BcanWSM471_29895 (ligD)
DNA repair and recombination proteins [BR:
bcan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BcanWSM471_29895 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DUF4232
Motif
Other DBs
NCBI-ProteinID:
UFW45102
LinkDB
All DBs
Position
complement(6372302..6374977)
Genome browser
AA seq
891 aa
AA seq
DB search
MLQKLSKYRQKRDFEKTPEPSGKTAVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESEDPERGFK
KGDLKFTLHGEKLHGSWVLVRMRNDRTGGKRTNWLLIKHRDEYVREGADNDILEEDKSVA
SGRAMDQIAEGKGRAPKPFMLAKGTKAKADAVWQSNRADEAKERTVKPAPRAALKTGKTA
KRKATTATTAKKAEMPDFVAPQLCTSVERPPGGDGWCHEIKFDGYRVQLRVEGGKATLKT
RKGLDWTGKFASIAKEAGALPDMMVDGEIVALDHNGAPNFSSLQAALSDGKTDELIFFAF
DLLFAEGLDLRRLPLGERKDRLKELLEARKKKSSQIRYVEHFESGGDAVLQSACKLELEG
VVSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGYKTTNGKFRSLMAGVHRGDHLAFVGMV
GTGFGADKVKRIMPSLKAMEAKQSPFGGKNAPKKAREVHWLKPELVAEIEFAGFTADGNI
RQAAFKGLRQDKPAEEVEAETPVDTELAEPSSKRRAKAKTGARTAQAGGSAEVMGVVISK
PDKELWPDDGNGDPVTKLDLARYLEAVGEWMIVHLKGRPCSLIRAPDGIKGECFFQRHAM
QGTSNLLELARVSGDRKPYLQIDRIEGLAAVAQIGGVELHPWNCAPYAYDTPGRLVFDLD
PAPDVVFAEVVEAAKEMRQRLTDIGMESFCKTTGGKGLHVVVPLRHGARDQVSWKEAKAF
AQGVCQWMADDDPERYLLNMSKKLRTGKIFLDYLRNDRMSTAVAPLSPRARDGATVSMPV
TWAQVKSDLDPKRYTVRTVPGLLARSKAWDGYADAAASIKAAIKKLAAKKK
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcaaaagctctccaagtatcgacagaaacgtgatttcgagaagacgccggagccg
tcgggcaagaccgcggtggcgccgtcgaagcagcggcgcttcgtgatccagaaacatgac
gccacgcggctgcactacgatctgcggctcgagttcgacggcgtcttcaagtcctgggcg
gtgacgaaaggaccctcgctcgatccgcacgacaagcggctggccgtcgaggtcgaggac
catccgctcgactatggcgacttcgagggcacgattccggaaggccagtacggcggcggc
acggtcatgctgtgggatcgcggcacctgggaatccgaagatcccgaacgcggtttcaag
aagggcgatctgaagttcaccctgcatggcgagaagctgcacggcagctgggtcctggtg
cgcatgcgcaacgaccgcacgggcggcaaacggaccaattggctcttgatcaagcatcgc
gacgaatatgttcgcgagggcgcagacaacgacattctcgaggaggacaaatcggtcgcc
tccggccgcgcgatggatcagatcgccgaaggcaaggggcgagcaccaaaaccgttcatg
ctggcgaagggcaccaaggccaaggccgacgcggtctggcagtccaaccgggcggacgag
gcgaaagagcgcacggtcaagccggcaccccgcgcggcgttgaagaccggcaagacggca
aagaggaaagccacgaccgcgacgaccgcgaagaaggcggagatgccggatttcgtcgcg
ccgcagctctgcacctcggtcgagcgcccgcctggcggcgatggctggtgccacgaaatc
aagttcgacggctaccgcgtgcagctgcgggtcgagggcggcaaggcgacgttgaagacg
cgcaaaggcctcgactggaccggaaaattcgcaagcatcgcgaaggaagcgggcgcgttg
ccggatatgatggtcgacggcgagatcgtcgcgctcgatcataacggggcaccgaacttt
tcgtcgctccaggccgcgctgtcggacggcaagaccgacgagctcatctttttcgccttc
gacctgttgttcgccgaaggcctcgatttgcggcggctgccgctcggggagcgcaaggac
cgcctcaaggagctcctggaggcacgcaagaaaaaatcaagccagatccgctatgtcgag
catttcgaaagcggcggcgacgccgtgctgcaatcggcctgcaagctcgagctcgagggc
gtggtgtcgaagaagctcgatgcgccttatcgttcggggcggacagaaagctggaccaag
gccaaatgccgcgccggccatgaggtcgtgatcggcggctacaagaccaccaatggcaaa
ttccgttcgctgatggccggcgtacaccgcggtgatcatctcgccttcgtcggcatggtc
ggcaccggcttcggcgcggacaaggtcaagcgcatcatgccgtccttgaaggccatggag
gccaagcaaagcccattcggcggcaagaacgcgccgaaaaaggcgcgcgaggtgcactgg
ctgaagccggagcttgtggcggagatcgagttcgccggcttcaccgccgacggcaatatc
cgccaggccgccttcaagggtctgcggcaggacaagccggcggaggaggtcgaggccgag
acaccggtcgataccgagcttgccgagccctcttcgaagcggcgcgcgaaagcgaagacc
ggcgcgcgaacggcccaggccggcggcagtgccgaagtgatgggagtcgtcatttccaag
ccggacaaggagctctggccggacgacggcaatggcgatcccgtcaccaagctggatctc
gcgcgctatctcgaagctgtcggcgaatggatgatcgtccacctgaagggccgtccgtgc
tcgctgatccgcgcccctgacggcatcaagggcgaatgcttcttccagcgccacgccatg
cagggcacctcgaaccttctggagctcgcgcgggtctccggcgaccgcaagccctatttg
cagatcgaccgcatcgaagggctcgccgccgtggcgcagattggcggcgtcgagctgcat
ccctggaattgcgcgccctacgcctacgataccccgggccggctggtgttcgatctcgat
ccggcgcccgacgtcgtcttcgccgaggtcgtcgaggccgccaaggagatgcggcagcgg
ctgaccgacatcggcatggaaagcttctgcaagaccaccggcggcaagggcctgcacgtc
gtggtgcccttgcgtcatggcgctcgcgatcaggtgagctggaaggaggccaaggccttc
gcgcaaggcgtttgccagtggatggcggacgacgatcccgagcgctatctgctcaacatg
tcgaagaagctgcgaacgggaaagatcttcctggactatctgcgcaacgaccgcatgtcg
acggcggtggccccgctgtccccccgcgcgcgcgatggtgcgactgtgtcgatgccggtc
acgtgggcgcaggtgaagagcgacctcgatccgaagcggtacacggtgcgaacggtgcca
ggcttgctggcgcgatcgaaggcgtgggatggctacgccgatgcagccgcgtcgatcaag
gcggcgatcaagaagctcgcggcgaaaaagaagtag
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