Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043: BBCT_0669
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Entry
BBCT_0669 CDS
T03931
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcat
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Pathway
bcat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBCT_0669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcat03400
]
BBCT_0669
Enzymes [BR:
bcat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBCT_0669
DNA repair and recombination proteins [BR:
bcat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBCT_0669
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AAA_22
SpaA
Motif
Other DBs
NCBI-ProteinID:
BAR01637
UniProt:
B6XU22
LinkDB
All DBs
Position
816603..820151
Genome browser
AA seq
1182 aa
AA seq
DB search
MAAEPVQLPTSGSLAGILDVLETDEDFRALISGEIEVPESDIDPSITVGIPEGLRPALAA
GASGTRPVVFVVASGREAEETVETIRSWYSGDPNDVAQLEAWETLPHERLSPRADTVASR
MAVFRRLKHPQEGSKLFGPIRILVMPVRSLIQPVVAGLADVEPLVFSQGEELALDEASRR
LVENAYTRVDLVMDRGEFAVRGGIIDVFPPTLPHPVRIEFFGDEIDTIREFHASDQRTYG
GNVPVVWATPCRELQLTDKVRKRAKSLIGSIPNAEDMLESIANAIPVEGMESLLPALVDD
MEPVQGMLPKHALVMLSDPEKLRRSADDLAKTANEFLAASWHVAASGHGAGAPITFDQAN
FYDFEETISSLVFSRHDVWKLTSFGVDSSREGHVQLDAANPGEYRGDEVKAASGIEGLLD
AGYAVTVTAGAQGTLVRLKRAINETGIANFDCIRSRAIDGFVDNAAKVALLTERDLTGRT
SAAGQAKTPKRRRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRTIGAGANQTTREYLVIE
YASSKRGAPADKLFIPTDQLDQVSKYIGADAPKLNKLGGSDWAATKAKARKHVHEIAEDL
VKLYSARQRMQGYAFSKDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPVPMDRLICG
DVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVQQHFETFTERFEGFPVEVRAMSRFQT
TKEINDTIKGLEDGSVDVVIGTHKLLGPKVKFKDLGLVIIDEEQRFGVEHKETLKALRTN
VDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAVRRELLR
GGQVFYVHNRVQDIASVAAKIHELVPESHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCT
TIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPTKPMTQQSHD
RLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEQYKE
PERVESVAVTIDLPIEASIPVGYIDSDKLRLEAYRKLAGARTEADLDELRDELTDRYGKP
PVDFEALFDVARLRFKARKLGITEIIGQGRNIRVSKFEPRESVQMRMARIYKGIQYRPVT
QTYVIPTPFAGSLGSGPMSSDEIVGWTNQLLDDLDWKPAPRK
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgaaccggtgcagttgccgacttcaggttccctggctggcattcttgacgta
ctcgaaaccgacgaggattttcgtgcgctgatttccggtgagatcgaggtgccggaatcc
gacatagaccccagcattaccgttggcattcccgaaggattgcgcccggcactggccgct
ggagcatcgggaacacggccggttgtatttgtggtggcctccggtcgcgaagccgaagag
acggtcgagacgattcgttcgtggtattccggcgatccgaacgacgtggcacagctcgaa
gcatgggagaccttgcctcatgaacgcctctcgccacgcgccgataccgtggcgagccgt
atggcggtgttccgcaggctgaagcaccctcaagagggaagcaagctgttcggccccatc
cgcattctcgtcatgccggtgcgatccctgatccagccagtggttgcaggtttggccgac
gtggagcctttggtgttttctcaaggcgaggaattggcgctcgacgaggcgtcgcgtcga
ctggtggaaaatgcttatactcgagtcgatctggtgatggatcgtggtgaattcgcggtg
cgaggaggcattatcgacgtgttcccaccgacattgccacatcctgtgcgtattgagttc
ttcggtgatgagattgacaccatcagggagttccacgcttcggatcagcgtacgtatggc
gggaatgttcctgttgtttgggccacgccatgccgtgaactgcaattgactgacaaggtg
cgcaagcgtgcgaaatccttgattggatccattcccaatgccgaagacatgctagaatcc
attgccaacgccattccggtcgaaggtatggaatcgttacttcccgcattggtcgatgac
atggagccggtgcagggcatgttgcccaagcatgcgctggtcatgctctctgatccggaa
aaattgcgtcgttcggctgacgatctcgcaaaaaccgccaatgagtttcttgcggccagc
tggcatgtcgcagcatccggtcatggtgccggcgctccgattacgttcgatcaggcgaat
ttctacgattttgaagaaacgatttcatcgctggttttctcaaggcatgacgtatggaag
cttacgagtttcggcgtggactcaagcagggaaggacacgttcagctcgacgctgccaat
cccggcgaatatcgcggagatgaagtcaaagccgcatccggtatcgaaggtcttcttgat
gccggctatgccgtcaccgtcactgcaggagcgcaaggtactcttgttcgactcaagcgt
gccatcaacgaaacgggaatcgccaacttcgactgcatcagatcgcgtgccatcgacgga
ttcgtcgataatgctgcgaaagtcgcactgcttaccgaacgcgatctgaccggacgcaca
tcggccgcgggacaggcaaaaacaccgaaacgtcgccgtaaggccattgaccttatggag
ctcaaagccggcgattacgtggtgcatgagcagcatggcatcggccggttcctcgaaatg
cgacagcgtaccatcggagcgggcgccaaccagacaacacgcgaatatctggtcatcgaa
tacgcatccagcaagcgcggcgcacctgccgacaaactgttcatccccaccgatcagctt
gaccaagtcagcaaatacatcggtgccgacgctccaaaactcaacaaactgggcggatcc
gactgggctgctaccaaggcgaaagcacgtaagcatgtgcacgaaatcgccgaagatctg
gtcaaactgtattcggcacgtcaacgcatgcaggggtatgccttcagcaaagacacccct
tggcagaaagaactggaagacgctttcccataccaagaaaccgccgatcagctgactacc
atcgacgaagtcaaatccgatatggaaaagcccgtgccgatggatcgcctgatttgtggc
gacgtgggattcggcaaaaccgaaatcgccgtacgtgccgcattcaaggcggtgcaggat
tccaaacaggtggctgtgctggtgccgaccacattgctggtgcaacagcatttcgagacg
ttcaccgaacgttttgaaggattcccggtggaagtaagggcgatgagccgtttccaaacc
accaaggaaatcaacgacaccatcaagggacttgaagacggttccgtcgatgtggtgatc
ggtacgcacaaactgctcgggccgaaggtcaaattcaaggatctaggcctggtcatcatc
gatgaggagcagcgtttcggtgtcgaacacaaagagacgttgaaggcgctgcgtaccaat
gtggatgtgctgagtctgtcggcaacaccgattccgcgaacgttggagatggccgttaca
ggcattcgtgaaatgtccacgttggccacgcctccggaagaccgcttgccggtgcttact
tacgttggcgcgtatgaggatgctcaggttactgctgcggtcaggcgtgagctgttgcgc
ggtggccaggtgttctatgtgcacaaccgagtgcaagacatcgcttcggttgccgcgaag
attcacgagctggtgccggaatcgcatgtcggcatcgcccatggcaagatgggggagaag
cagctcgacggtgtgatccgagacttctggcatcgcgacattgatgtgctcgtatgcacc
accatcatcgaaaccggtcttgatatttccaatgcgaatacgttgatcgtcgatcatgcc
gaccgtttcggcctaagccagctgcaccagctgcgtggccgtgtcgggcgaggccgtgag
cgtgcctacgcgtacttcctgtacgatccgaccaagccgatgacccagcaatctcatgac
cgactggccaccatcgcgcagaacactgcgcttggttcaggttttgacgtggcgatgaag
gatctcgagctgcgtggcactggcaatctgctgggcgacgagcagagcgggcatatcgag
ggcgttggcttcgatctgtatgtgcgcatggtttccgaagctgtcgaacagtacaaggag
ccggaacgtgtggaatcggttgctgtcacaattgatctgccgatcgaagcgtccatcccc
gtcggctacatcgattccgacaaattgcgattggaagcctaccgcaagctggcaggggca
cgtacggaagctgatcttgacgagttgcgcgatgaacttacggatcgttacggcaagcct
ccggtcgatttcgaagcattgttcgatgtggcgcgattgcgattcaaagcaagaaagctt
ggcattacggagatcatcggtcaaggacgtaacattcgtgtgtccaaattcgagccacgt
gaatccgtacagatgcgcatggcgcgaatctacaaaggcatccagtacaggcctgtcact
caaacgtatgtgatccccaccccgtttgcgggttcgcttggatccgggccaatgagttcc
gatgagatcgttggatggaccaaccaacttctcgacgatcttgactggaagccagcgcca
aggaaataa
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