Brevibacterium casei: I6G59_09360
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Entry
I6G59_09360 CDS
T06973
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcau
Brevibacterium casei
Pathway
bcau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6G59_09360 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcau03400
]
I6G59_09360 (mfd)
Enzymes [BR:
bcau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6G59_09360 (mfd)
DNA repair and recombination proteins [BR:
bcau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6G59_09360 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
MFD_D3
AroM
Motif
Other DBs
NCBI-ProteinID:
QPS35501
UniProt:
A0A7T9YSA0
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All DBs
Position
2093001..2096528
Genome browser
AA seq
1175 aa
AA seq
DB search
MADPTTTGGTIDATKGLWPSILRRTVSSGPAASPQLIVTATTREAEDLARSLADWVPADS
IAVFPSWETLPHEKLSPRSDTVGQRLEILRRLAHPKPGGALTFIIAPVRAFLQPLAKGLG
EIPPIELAVGDEAEIEAFSARLTELAYTRVDMVSRRGEYAVRGGIVDVFPPTVDHPLRIE
FFGDEVDEIREFAVADQRSIPAEADADPLRLSAPPVRELLLTDSVRARAAELAPTLPAAA
DMLEKIAAGIAVEGMESLTAVLADGMEPLIALLPEGTKIIVTEPERVAARAADLVVTTNE
FLEAAWSGAAAGGDSPIDLSAATFRTLEEMREGAGLIGLAWWEIGGFATDAELVSPHANL
FSIPARPPKGYAGDVEAILTDVRGLVHDQWRILVLTEGQGPGQRMVEVFSEAGVPATFVE
DPTDAPEALVTVTTAAPFGGFVFDDLKLAVLTEADVLGRAAATSTRDMRRLPTRRKRNQV
DPLNLAPGDLVVHEQHGVGRFVEMTQRTTGKGAAKHTREYLIIEYAPAKRGQPGDRLYVP
SDALDQVSRYVGGENPSLNKMGGADWQSTKAKARKAVKEIAGELIRLYSARQATVGHAYG
PDTPWQRELEDAFHYVETTDQLTTIDEVKADMEKSVPMDRLICGDVGYGKTEIAVRAAFK
AIQDGKQVAVLVPTTLLVQQHFETFAERYAGFPVTVGALSRFQTKQESEKVVSDLADGKL
DLVIGTHRLLSGEVRFKNLGLVIIDEEQRFGVEHKETLKAMRTNVDVLAMSATPIPRTLE
MAVTGIREMSTLATPPEERHPVLTYVGKYEDQQVKAAIRRELMREGQVFYIHNRVRDIEA
VAARLAELVPEARIAIAHGKMNEHRLEQVIVDFWEKKYDVLVCTTIVETGIDIANANTLI
IDHADRYGLSQLHQLRGRVGRGRERAYAYFLYPADTQLTETALDRLTTLAAHTELGAGMQ
VAMKDLEIRGAGNLLGGQQSGHIEGVGFDLYVRLVGEAVANFRGEDTEPEAEMRIELPVD
AHLPAEYVDHERLRLEAYRKLAAAANEDELQEVLDELVDRYGPYPEAVGVLADVARLRIR
ARASGVNDIVVQGNFVRFGPVELEDSQVVRLKRLYPKSLLKPAIRSVLVPKPMDGNGFGA
KEMTDSDILRWAHQFLDAILPVVPAEVVPSEVVQA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggccgacccgacgacgaccggcgggaccatcgacgcgaccaagggactgtggccctcg
attctgcggcgcaccgtctcctccgggcccgccgcctcaccgcagctcatcgtcaccgcc
acgacccgggaggccgaggacctcgcgcggtcgctggccgactgggtgcctgccgactcg
atcgccgtcttccccagctgggagaccctgccgcacgagaagctctccccgcgctcggac
actgtcggtcagcgcctcgagatcctccgccgcctcgcccacccgaagcccgggggcgca
ctcacgttcatcatcgcccccgtccgcgcgttcctccagcccctggccaagggactcggg
gagatcccgccgatcgagctcgccgtcggcgacgaagccgagatcgaggcgttctccgcg
cgtctgaccgaactcgcctacacccgtgtcgacatggtctcccgccgtggcgagtacgcc
gtgcgcggcggcatcgtcgacgtcttcccgccgacggtcgaccatccgctgcgcatcgag
ttcttcggcgacgaggtcgacgagatccgtgagttcgccgtcgccgatcagcgctccatc
cccgccgaggcggacgccgaccccctgcgcctgtccgcgcccccggtccgcgaactcctc
ctcaccgactccgtccgggcgcgggccgccgagctcgcccccacccttcccgccgccgcc
gacatgctcgagaagatcgccgcaggcatcgccgtcgagggcatggagtcgctcaccgcg
gtcctcgccgacgggatggaaccgctcatcgcgctcctgcccgagggcacgaagatcatc
gtcaccgaacccgaacgtgtggccgcgcgcgccgccgacctcgtggtgacgacgaacgag
ttcctcgaagccgcgtggtcgggtgccgccgcgggcggggactcgccgatcgacctctcc
gccgcgaccttccgcacgctcgaggagatgcgcgagggcgccggactcatcggactcgcc
tggtgggagatcggggggtttgcgaccgacgccgaactcgtctccccgcacgcgaacctc
ttctccatccccgcccggccgccgaagggctacgccggtgacgtcgaggcgatcctcacc
gacgtgcgcgggctcgtccacgaccagtggcggatcctcgtcctcaccgaaggacaaggg
ccgggccagcgcatggtcgaggtgttctccgaggccggggtgcccgcgaccttcgtcgag
gacccgaccgatgcgcccgaggccctcgtcaccgtgaccacggccgccccgttcgggggc
ttcgtcttcgacgacctcaagctcgccgtgctcaccgaggccgacgtcctcgggcgggcg
gctgcgacctcgacccgtgacatgcgccgactgccgacccgccgcaagcgcaaccaggtc
gaccccctcaacctcgcccccggagacctcgtcgtccacgagcagcacggtgtcggacgg
ttcgtcgagatgacgcagcggacgacgggcaagggcgccgccaagcacacgcgcgaatat
ctcatcatcgaatacgcgccggccaaacgcggccagcccggtgaccgactctacgtgccc
tccgacgccctcgaccaggtcagccgctacgtcggcggtgagaacccgagtctgaacaag
atgggcggcgccgactggcagtcgacgaaggcgaaggcgcgcaaggcggtcaaggagatc
gccggggagctcatccgcctctactcggccaggcaggcgaccgtcggccacgcgtacggg
cccgacaccccgtggcagcgcgaactcgaggacgccttccactacgtcgagaccaccgat
cagctcacgacgatcgacgaggtcaaggccgacatggagaagtcggtgccgatggaccgg
ctcatctgcggcgacgtcggctacgggaagacggagatcgcggtgcgggcggcgttcaag
gcgatccaggacggcaaacaggtcgccgtcctcgtcccgaccaccctcttggtccagcag
cacttcgagaccttcgccgagaggtacgcgggattccccgtcaccgtcggtgccctctcc
cggttccagacgaagcaggagtcggagaaggtcgtgtccgacctcgccgacggcaagctc
gacctcgtcatcggcacgcaccgcctcctcagcggggaggtgcggttcaagaacctcggg
ctcgtcatcatcgacgaggagcagcgcttcggcgtcgagcacaaggagactctcaaggcg
atgcgcacgaacgtcgacgtgctggcgatgtcggcgaccccgatcccgcgcacgctcgag
atggccgtgaccggcatccgcgagatgtcgacgctcgcgaccccgcccgaggagcgccac
cccgtcctcacctacgtcggcaagtacgaggaccagcaggtcaaggccgcgatccggcgc
gagctcatgcgcgagggccaggtcttctacatccacaaccgggtgcgcgacatcgaggcc
gtggccgcccgcctcgccgaactcgtgcccgaggcccggatcgcgatcgcccacggcaag
atgaacgagcaccgtctcgagcaggtcatcgtcgacttctgggagaagaagtacgacgtg
ctcgtgtgcacgacgatcgtcgagaccggcatcgacatcgcgaatgccaacaccctcatc
atcgaccacgccgaccgctacggcctctcccagctccaccagctgcgcggccgcgtgggt
cgaggccgcgaacgcgcgtacgcgtacttcctctaccccgccgacacccagctcacggag
accgccctcgaccggctgacgaccttggccgcgcacaccgagctcggcgccgggatgcag
gtagcgatgaaggacctcgagatccgcggcgccggcaacctcctcggcggccagcagtcg
ggacacatcgaaggggtcggcttcgacctctacgtccgcctcgtcggcgaggcggtcgcg
aacttccgcggcgaggacacggaacccgaggcggagatgcgcatcgagctgcccgtcgac
gcccacctgcccgccgagtacgtcgatcacgagcggctgcgcctcgaggcgtaccggaag
ctcgcggccgcggcgaacgaggacgaactccaggaggtcctcgacgaactcgtcgaccgc
tacggtccctacccggaggccgtgggcgtcctcgccgacgtcgcccggctgcggatccgg
gcgcgcgcctcgggcgtcaacgacatcgtcgtccagggcaacttcgtccgcttcggaccc
gtcgaactcgaggactcccaggtcgtgcggctcaagcgcctctatccgaagtcgctgctc
aagcccgcgatccgctcggtcctcgtgcccaagccgatggacggcaacgggttcggagcc
aaggagatgaccgactccgacatcctccgctgggcccaccagttcctcgacgcgatcctc
ccggtcgtccccgccgaggtggttccctccgaggtcgttcaggcatga
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