Burkholderia cenocepacia DDS 22E-1: DM39_7047
Help
Entry
DM39_7047 CDS
T03308
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcen
Burkholderia cenocepacia DDS 22E-1
Pathway
bcen03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DM39_7047 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcen03400
]
DM39_7047 (ligD)
Enzymes [BR:
bcen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DM39_7047 (ligD)
DNA repair and recombination proteins [BR:
bcen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DM39_7047 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AIO30538
UniProt:
A0A088TZT9
LinkDB
All DBs
Position
3:972718..975384
Genome browser
AA seq
888 aa
AA seq
DB search
MADKLEPYRRMRRFDATPEPEGAHGRRRAAAGARSKPPARGRQPLRYVIQEHHARRLHYD
FRLELDGTLKSWAVPKGPSVDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVVVWDE
GTWVPDGGLAGARDGYRAGKLTFRLDGRKLHGGWALVRSGRQEGRQEQWLLIKERDDEAR
DAEGYDVVAQQPGSVHRRAASRPLAPSGIEGAVRAPLPERVAPQLATLVDAPPAHGDWRY
ELKFDGYRILARIAGKGARRHVTLMTREGRDWTAKLRPQRDALAALGVDDAWLDAEAVVL
GEHGLPDFQALQNALGAGRADAVTLFVFDLPYLDGYDLRDAPLTARRALLEPLLADCDPV
RLRFSPDLGDDVATLIANACDTGLEGLIGKRADARYRAGRSPAWIKLKCRRRQEFVIGGY
TEPSGARNGFGALLLGVHEPAPQGTKRRDAGPLRYVGRVGTGFDTRTLDRLAAILRAHER
DAAPFDPPPREWSRTRVHWVEPTLVAECEFAEWTGDGIVRQAAFIALRDDKPAAQIVREV
ARHTATEATMDERNTTDGARDGAQHDGGATRARTRRSTGAQSRAGTPRGEAAPDQVGRVR
ITHPERVVDPQHGTRKIDLAHYWEWVAPWLLPDLAGRPVSLVRAPEDITGELFFQKHADR
REIPYVARHAGLDPGHGPLLTIDSVDALVGAAQMGTVELHTWNAHVSNIERPDRIVFDLD
PDPALPWRAMIDAAQLVRGLLDELGLVSFCKTSGGKGLHVVVPITRHAGWDEVKDFSRAV
AQHVAAALPDRFTATMGPRNRRGKIFIDYLRNGRGASTIAAYSVRARPGMGVSVPIGWDE
VPDTTGGAQWTIDTLYERLEHLARDPWEDYANTRQRITARMRARLATS
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaagctcgaaccctatcgccggatgcgccgcttcgacgcgacgccggagccc
gaaggcgcgcacggccggcgccgcgcggcagccggcgcgcggtcgaagccgcccgcgcgc
ggccggcagccgttgcgctacgtgatccaggaacatcacgcgcgccgcctgcattacgac
ttccgtctcgagctcgacggcacgctgaagtcctgggcggtgccgaaagggcccagcgtc
gatccgtcggtgaagcgcctcgcggtgcatgtcgaggatcatccgctcgaatatgcgtcg
ttcgagggcgagatcccggccggccattacggcgccggttcggtcgtcgtctgggacgaa
ggcacgtgggtgccggacggcgggctggccggcgcacgcgacggctatcgtgcgggcaag
ctgacgttccggctcgacggccggaagctgcacggcggctgggcactggtgcgcagcggc
cggcaggaagggcggcaggagcaatggctgctgatcaaggaacgcgacgacgaggcgcgc
gacgcggagggctatgacgtcgtcgcgcagcagccgggcagcgtgcatcggcgcgccgct
tcgcgcccgctcgcgccgtccggcatcgaaggcgcggtgcgcgcgccgctgcccgagcgc
gtcgcgccgcagctcgcgacgctggttgacgcgccgcccgcgcatggcgactggcgctac
gaactgaagttcgacggctaccggatcctcgcgcgcatcgcgggcaagggcgcgcgacgg
cacgtgacgctgatgacgcgcgaagggcgcgactggaccgcgaagctgcggccgcagcgc
gacgcgctcgcggcgctcggcgtcgacgacgcgtggctcgacgccgaggccgtggtgctc
ggcgagcacgggctgcccgatttccaggcgctgcagaacgcgctcggcgcggggcgcgcg
gatgccgtcacgctgttcgtgttcgacctgccctatctcgacggctacgacctgcgcgat
gcgccgctgaccgcgcgccgcgcgctgctcgaaccgctgctcgccgactgcgacccggtg
cggctgcgcttttcgcccgatctcggcgacgacgtcgcgacgctgatcgcgaacgcgtgc
gacacgggcctcgaaggcctgatcggcaagcgcgcggacgcgcgctatcgcgcggggcgc
tcgccggcgtggatcaagctgaagtgccggcgccggcaggaattcgtgatcggcggctat
accgagccgtcgggcgcccgcaatggtttcggcgcgctgctgctcggcgtgcacgagccg
gcgccgcagggcacgaagcgacgcgacgccgggccgctgcgctatgtcggccgcgtcggc
accggcttcgacacgcgcacgctcgaccggctggccgcgatcctgcgcgcgcacgaacgc
gacgcggcgccgttcgatccgccgccgcgcgagtggtcgcgcacgcgcgtgcactgggtc
gagccgacgctcgtcgccgaatgcgagttcgccgaatggaccggcgacggcatcgtgcgc
caggcagcgttcattgcgctgcgcgacgacaagccggcggcgcagatcgtcagggaggtt
gcacgacacaccgcaacggaggcaacgatggacgagcgcaacacgacggatggcgcgcgc
gacggcgcgcagcacgacggcggcgcgacgcgcgcgcgaacccgacgcagcacgggggcg
cagtcgcgcgccggcacgccccgcggcgaggccgcgcccgatcaggtcggccgcgtgcgc
atcacccatcccgagcgggtggtcgatccgcagcacggcacccgcaagatcgatctcgcg
cactactgggaatgggtcgcgccgtggctgctgcccgatctcgcggggcggccggtgtcg
ctggtgcgcgcgccggaggacatcaccggcgagctgttcttccagaagcatgcggatcgc
cgcgagattccgtacgtcgcacggcatgccggcctcgatccgggtcacgggccgctgctg
acgatcgacagcgtcgacgcgctggtcggcgccgcgcagatgggtacggtcgaactgcat
acgtggaacgcgcacgtgtccaatatcgagcgtccggaccggatcgtgttcgacctcgat
cccgatcccgcgctgccgtggcgcgcgatgatcgatgccgcgcagctcgtgcgcggcctg
ctcgacgaactcgggctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtg
gtcgtgccgatcacgcggcacgcgggctgggacgaggtgaaggacttctcgcgcgcggtc
gcgcagcatgtcgcggcggcgctgcccgaccgcttcaccgcgacgatggggccgcgcaac
cggcgcggcaagatcttcatcgactacctgcgcaacgggcgcggcgcgagcacgattgcg
gcctactcggtgcgcgcgcggcccggcatgggcgtgtcggtgccgatcggctgggacgag
gtgcccgacaccaccggcggcgcgcagtggacgatcgacacgctgtacgaacgactcgaa
cacctcgcgcgcgatccgtgggaagactacgcgaacacgcggcagcggatcaccgcgcgc
atgcgcgcgcggcttgcgacatcgtga
DBGET
integrated database retrieval system