Burkholderia cenocepacia H111: I35_1940
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Entry
I35_1940 CDS
T03804
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bceo
Burkholderia cenocepacia H111
Pathway
bceo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bceo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I35_1940 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bceo03400
]
I35_1940 (mfd)
Enzymes [BR:
bceo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I35_1940 (mfd)
DNA repair and recombination proteins [BR:
bceo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I35_1940 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
CDN60463
LinkDB
All DBs
Position
1:2102313..2105783
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AA seq
1156 aa
AA seq
DB search
MPDNASTPSASPVARVKPGQRFAFDGAHGSADALAIARYLADNRQDVPLLAVICANAVDA
QRLSQEIRYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFTGDLEASI
RRFTADTKQRHAFLAHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATALP
ELTVDRHADDPLASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLRPASNDDFASWL
ASDERFALGVAPLANGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYSGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFSLDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEALVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRIAAKPLGIV
KIDASEVAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALGPKQGAAVAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagataacgcttccaccccgtccgcttcacccgttgcccgcgtcaagcccggccag
cgtttcgccttcgacggcgcgcacggctccgccgacgcgctcgccatcgcccgttatctc
gccgacaaccgccaggacgtgccgctcctcgcggtgatctgcgcgaacgcggtcgatgca
cagcggctgtcgcaggaaatccgctacttttcgcccgatgcgcgcgtgcgcctgctgccc
gactgggaaacgctgccgtacgacaccttctcgccgcaccaggacctggtgtccgagcgg
ctcgcgacgctgcacgacctcggcgagggccgctgcgacatcctgctcgtgcccgcgacc
accgcgctgtaccggatgccgcccgcgtcgttcatggccgcgtacacgttcgcgttcgcg
cagggcgagcggctcgacgaggcgaagctgaaggcgcaactcacgctggccggctacgag
cacgtgagccaggtcgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctg
tacccgatgggctcgccgctgccgtaccggatcgacctgttcgacgaccaggtcgattcg
atccgcgcgttcgatcccgatacgcagcgcagcctctacccggtgcgcgacgtgcggctg
ctgcccggccgcgagtttccgttcgacgaagccgcgcgcacggcgtttcgcagccgctgg
cgcgaaaccttcgaaggcgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtattacctgccgctgttcttcgacgagacggccacgctg
ttccactacctgccgcaggacgcgcacctcgtgttcaccggcgacctcgaggcgtcgatc
cgccgcttcacggccgacacgaagcagcgtcacgcgttcctcgcgcacgatcgcgagcgg
ccgatcctcgagccgcagcggctgttcctgtccgacgaggatttcttcgcgttcgcgaag
ccgttcgcgcgcgtcgtgctgcccgcgcagccggccggcggctgggcgaccgccctgccc
gagctcaccgtcgaccgccatgcggacgatccgctcgcgtcgctgcgcacgttcgtcgaa
tcgtcgggcaagcgtgtgctgctgacggtcgaatcggccggccgccgcgagacgatcctg
caactgctggccgaacaccacctgcgccccgcgtcgaacgacgacttcgcgagctggctt
gcaagcgacgaacgcttcgcgctcggcgtcgcgccgctcgcgaacggcttcgcggtgccg
ggcgaaggctatgcgatcgtcaccgagaccgagctgtacggcgcgctcggccgccgcgcg
ggccgtcgtcggcaggagcaggcaagcaacgtcgacgcgatggtgcgcgacctgtccgag
ctgaaggtcggcgacccggtcgtccacgcgcagcacggcatcggccgctacatgggcctc
gtgtcgatggatctcggcgaaggcgaaaccgaattcctgcatctcgaatactcgggcgac
agcaagctctacgtgccggtcgcgcaactgcacgtgatctcgcgctacagcggcgccgat
cccgacagcgcgccgctgcacgcgctcggctccggccagtgggagcgcgcgaagcgcaag
gctgcccagcagatccgcgatacggccgccgaactgctgaacctgtacgcgcgccgcgcg
gcccgcgaaggccacgcgttctcgctcgacccgcgcgactacgtgaaattcgcggaaagc
ttcggcttcgaggaaacgcccgaccaggccgcggcgatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gtcgcgctgcgcgcggcgttcatcgcggtgctgggcggcaagcaggtcgcgctgctgtcg
ccgaccacgctgctcgccgagcagcacacgcagaccttcgccgaccgcttcgcggactgg
ccggtgcgcatcgtcgagctgtcgcgcttcaagaccgcgaaggaagtgaacgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcgtctcggcctcgtgatcatcgacgaggaacaccgcttcggcgtg
cgccagaaggaagcgctgaaggcgctgcgcgcggaagtcgacgtgctgacgctcaccgcg
acgccgatcccgcgtacgctcgggatggcgctcgaagggctgcgcgatttctcggtgatc
gcgaccgcaccgcagaagcggctcgcgatcaagaccttcgtgcgccgcgaggaggaaagc
gtgatccgcgaggcgatgctgcgcgagctcaagcgcggcggccaggtgtacttcctgcac
aacgaagtcgagacgatcgagaaccgcaaggcgatgctcgaggcgctcgtgcccgaggcg
cgcatcgtgatcgcgcacggccagatgcacgagcgcgagctcgaacgcgtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtgctgctgtgcacgaccatcatcgagaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcaccgcgcggacaagttcggcctcgcgcagctt
caccagttgcgcggccgcgtcggccgctcgcaccaccaggcctacgcgtacctgctggtc
cacgatccgcagtcgctgaccaagcaggcgcagcgccgcctggaagcgatccagcagatg
gaggaactcggctcgggcttctatctcgcgatgcacgacctcgagatccgcggcaccggc
gaagtgctcggcgacaagcagtcgggcgaaatccacgagatcggcttccagctctatacg
gacatgctgaacgacgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcc
ccgctcgccgcgacgaccgaaatcaacctgcatgcgcccgcgatcctgccggccgactac
tgcgcggacgtgcaggagcggctgtcgctgtacaagcggctcgcgaactgcgagcacggc
gacgcgatcgacggcatccaggaagagctgatcgaccgcttcggcaagctgccgccgcag
gcgcacgcgctcgtcgagacgcaccggctgcggatcgccgcgaagccgctcggcatcgtg
aagatcgatgcgagcgaggtcgcgatcgggctgcagttcgagccgaatccgccgatcgat
ccgatgcggatcatcgagatggtgcagaagcatcgccacatcaagctcgcgggccaggac
aagctgcgcatcgagacgcgctcgcccgatctcgcgatccgcgtgtcgacgatcaaggaa
acgctgcgcgcgctcggcccgaaacagggggcggccgtcgcggcccgctga
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integrated database retrieval system
