Burkholderia cepacia ATCC 25416: APZ15_14685
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Entry
APZ15_14685 CDS
T04772
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcep
Burkholderia cepacia ATCC 25416
Pathway
bcep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
APZ15_14685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcep03400
]
APZ15_14685
Enzymes [BR:
bcep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APZ15_14685
DNA repair and recombination proteins [BR:
bcep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
APZ15_14685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALK18948
UniProt:
A0A806UTS3
LinkDB
All DBs
Position
1:3183765..3187235
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AA seq
1156 aa
AA seq
DB search
MPDNASTPSASPIARVKSGQRFAFDGAHGSADALAIARYLADNRQDVPLLAVICANAVDA
QRLSQEIRYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFAGDLEASI
RRFTADTKQRHAFLAHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATALP
QLSVDRHADDPLASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLRPASNDHFAGWL
ESDERFALGVAPLANGFAVPGEGYAVVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYSGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFSLDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTTKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEALVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRIAAKPLGIV
KIDASEAAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALAPRQGAVAAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagataacgcttccaccccgtccgcctcgcccattgcccgcgtcaagtccggccag
cgtttcgccttcgacggcgcgcatggttccgccgacgcgctcgccatcgcccgttatctc
gccgacaaccgccaggacgtgccgctcctcgcggtgatctgcgcgaacgcggtcgatgcg
cagcggctctcgcaggaaatccgctacttctcgcccgacgcccgcgtgcgcctgctgccg
gactgggaaacgctgccgtacgacacgttctcgccgcaccaggacctcgtatcggagcgt
ctcgcgacgctgcacgatctcggcgagggccgctgcgacatcctgctcgtgcccgcgacc
accgcgctgtaccggatgccgcccgcgtcgttcatggccgcgtacacgtttgcattcgcg
cagggcgagcggctcgacgaggcgaagctgaaggcgcagctcacgctggccggctacgag
cacgtgagccaggtcgtgcggcccggcgaatactgcgtacgcggctcgctgatcgacctg
tacccgatgggctcgccgctgccgtaccggatcgacctgttcgacgaccaggtcgactcg
atccgcgcgttcgaccccgacacgcagcgcagcctctacccggtgcgcgacgtgcgcctg
ctgccgggccgcgagtttccgttcgacgaagccgcgcgcacggccttccgcagccgctgg
cgcgagacgttcgaaggcgacccgagccgcgcgccgatctacaaggacatcggtaacggc
gtgccgtcggccggcatcgagtattacctgccgctgttcttcgacgaaaccgccacgctg
ttccactacctgccgcaggatgcgcacctcgtgttcgccggcgatctcgaggcgtcgatc
cgccgcttcacggccgacacgaagcagcgtcacgcgttcctcgcgcacgatcgcgagcgg
ccgatcctcgaaccgcagcgcctgttcctgtccgacgaggatttcttcgcgttcgcgaag
ccgttcgcacgcgtcgtgctgcccgcgcagccggccggcggctgggcgacggcgctgccc
cagctctccgtcgatcgccatgccgacgatccgctcgcgtcgctgcgcacgttcgtcgaa
tcgtccggcaagcgcgtcctgctgaccgtcgaatcggccggccgtcgcgagacgatcctg
caactactcgccgaacaccatctgcgccccgcgtcgaacgaccacttcgcgggctggctc
gagagcgacgaacgcttcgcgctcggcgtcgcgccgctcgcgaacggctttgcagtgccg
ggcgaaggctacgcggtggtcaccgagaccgagctgtacggcgcgctcggccgccgcgcg
ggccgccgccggcaggaacaggcgagcaacgtcgatgcgatggtgcgcgacctgtcggaa
ctgaaggtcggcgacccggtcgtccacgcgcagcacggcatcggccgctacatgggcctc
gtgtcgatggacctcggcgaaggcgagactgaattcctgcatctcgaatactcgggcgac
agcaagctctacgtgccggtcgcgcaattgcacgtgatctcgcgctacagcggcgccgat
cccgacagcgcaccgctgcacgcgctcggctccggccagtgggagcgcgcgaaacgcaag
gccgcgcagcagatccgcgatacggccgccgagctgctgaacctgtacgcgcgccgcgcg
gcccgcgaaggccacgcgttctcgctcgatccgcgcgactacgtgaagttcgccgagagc
ttcggcttcgaggaaacgcccgaccaggcggcagccatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gtcgcgctgcgcgccgcgttcatcgcggtgctgggcggcaagcaggtcgcgctgctgtcg
ccgaccacgctgctcgccgagcagcacacgcagaccttcgccgaccgcttcgcggactgg
ccggtgcggatcgtcgagctgtcgcgcttcaagacgacgaaggaagtgaacgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcgcctcggcctcgtgatcatcgacgaggaacaccgcttcggcgtg
cgccagaaggaagcgctgaaagcgctgcgcgcggaagtcgacgtgctgacgctcaccgcg
acgccgatcccgcgcacgctcgggatggcactcgaggggctgcgcgacttctcggtcatc
gcgaccgcgccgcagaagcgcctcgcgatcaagaccttcgtgcgccgcgaggaagaaagc
gtgattcgcgaggcgatgctgcgcgagctgaagcgcggcggccaggtgtacttcctgcac
aacgaggtcgagacgatcgagaaccgcaaggcgatgctcgaggcgctcgtgcccgaggca
cgcatcgtgatcgcgcacggccagatgcacgaacgcgagctcgaacgggtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtgctgctgtgcacgaccatcatcgagaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcatcgcgcggacaagttcggcctcgcgcagctc
caccagttgcgcggccgcgtcggccgctcgcaccaccaggcatacgcgtacctgctcgtg
cacgatccgcaggcgctgaccaagcaggcccagcgccggctggaagcgatccagcagatg
gaggaactcggttcgggcttctatctcgcgatgcacgacctcgagatccgcggcaccggc
gaggtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctttatacg
gacatgctgaacgacgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcc
ccgctcgccgcgacgacggaaatcaacctgcatgcgccggcgatcctgccggccgactac
tgcgcggacgtgcaggagcggctgtcgctgtacaagcggctcgcgaactgcgagcacggc
gacgcgatcgacggtatccaggaagaactgatcgaccgcttcggcaagctgccgccgcag
gcgcacgcgctggtcgagacgcaccggctgcggatcgccgcgaagccgctcggcatcgtg
aagatcgacgcgagcgaggccgcgatcgggctgcagttcgagccgaatccgccgatcgat
ccgatgcggatcatcgagatggtgcagaagcaccggcacatcaagctcgcgggccaggac
aagctgcggatcgagacgcgctcgcccgacctcgcgatccgcgtgtcgacgatcaaggaa
acgctgcgcgcgctcgccccgaggcagggcgcggtggccgcggcgcgctga
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integrated database retrieval system