Burkholderia cepacia ATCC 25416: APZ15_36520
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Entry
APZ15_36520 CDS
T04772
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcep
Burkholderia cepacia ATCC 25416
Pathway
bcep03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
APZ15_36520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcep03400
]
APZ15_36520
Enzymes [BR:
bcep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
APZ15_36520
DNA repair and recombination proteins [BR:
bcep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
APZ15_36520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALK23343
UniProt:
A0A806VUB9
LinkDB
All DBs
Position
3:complement(972612..975392)
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AA seq
926 aa
AA seq
DB search
MAAKLDPYRRKRRFDATPEPEGAHGRRRAPADADARQSRKAGTSARTARPLRFVIQEHHA
RRLHYDFRLELDGTLKSWAVPKGPSVDPAVKRLAVHVEDHPLEYASFEGEIPAGHYGAGS
VVVWDEGTWTPDGGVAQARAGYRAGKLTFRLDGAKLHGGWALVRSGRQQGRQEQWLLIKE
RDDDARDAAAFDVVAQRPGSVHDGHTQAARGKGNGAVPPPARAARRGHGNAPGTHDGDAG
SPSTDLSRMDGAVRAALPERIAPQLATLVDAPPAHGDWRYEVKFDGYRILARIAGRGARR
HVTLMTREGRDWTAKLRAQRDALAALEVDNAWLDGEAVVLRENGLPDFQALQNALGAGRS
DSVTLFVFDLPFLDGYDLRDVPLAARRALLEPLLDGCDPARLRFSPDLGDDVVPLIAHAC
DTGLEGLIGKRAESRYRGGRSPAWIKLKCRRRQEFVIGGYTEPAGSRHGFGALLLGVHAP
DAGGKRSRGTPPLRYVGRVGTGFDTRLLDRLAAMLRKHERDTTPFDPPPHERSRTRVHWV
EPTLVAECEFAEWTGDGIVRQASFIALREDKPARRIVREVPRHTESETTMDEPQAAHGNP
HAPHTDTGHDRRPRARTHASAGRAPGEPGVDHVDRVRITHPDRVLDPRSGTRKIDLAHYW
SWVAPWLLPDLKGRPVSLVRAPGDIAGELFFQKHAERREIPFVRQHEGLDPGHGPLLSID
SVDALLGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWRAMIDAAQIVRGLLDE
LGLVSFCKTSGGKGLHVVVPLTRHAGWDDVKDFSRAVAQHVAATVPERFTATMGPRHRRG
RIFVDYLRNGRGASTIAAYSLRARPGMGVSVPLEWDEVPATTGGAQWTIDTLRERLDALK
RDPWEGYAHTRQRITASMRARLGAQT
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgaaactcgacccctatcgccgcaaacgccgcttcgacgcgacgccggagccc
gagggcgcgcacgggcggcggcgcgcgcccgccgacgcggacgcgcggcagtcgcggaag
gcgggaacgtccgcgcgcacggcccggccgttgcgcttcgtgatccaggagcaccacgcg
aggcggctgcactacgacttccgtctcgaactcgacggcacgctgaaatcgtgggccgtg
ccgaaagggccgagcgtcgatccggcggtgaaacggctggccgtgcacgtcgaggaccat
ccgctcgaatacgcgtcgttcgaaggcgagattccggccggacattacggtgcgggctcg
gtcgtcgtgtgggacgaaggaacgtggacgcccgacggcggcgtcgcgcaggcacgcgcg
ggctaccgtgccggcaagctgacgttccggctcgacggcgcgaagctgcacggcggctgg
gcgctggtgcgcagcgggcggcagcaggggcgccaggagcaatggctgctgatcaaggaa
cgcgacgacgacgcgcgcgatgcggcggcgttcgatgtcgtcgcgcagcggccgggcagc
gtgcatgacgggcacacgcaggccgcgcgcgggaaggggaacggcgcggtgccgccccct
gcgcgtgccgcgcggcgcggccacggcaacgcgccgggcacgcacgacggcgacgcgggc
agtccgtcgacagacctgtctcgcatggacggcgccgtgcgcgcggcgttgcccgagcgc
atcgcgccgcaactcgcgacgctggtcgatgcgccgcctgcgcacggcgactggcgctac
gaagtgaaattcgacggttaccggatcctcgcgcggatcgccggtcgcggcgcgcggcgg
cacgtcacgctgatgacgcgcgaaggccgcgactggaccgcgaagctgcgtgcgcagcgc
gatgcgctcgccgcgctcgaggtcgacaacgcatggctcgacggcgaagccgtcgtgctc
cgcgagaacggcctgcccgatttccaggcgctgcagaacgcgctcggcgcgggccgctcg
gactcggtgacgctgttcgtgttcgacctgccgtttctcgacggatacgacctgcgcgac
gtgccgctcgccgcccgtcgcgcgctgctcgagccgctgctcgacggctgcgatccggcc
cggctgcgtttttcacccgacctcggcgacgacgtcgtgccgctgatcgcgcacgcgtgc
gacacggggctcgaagggttgatcggcaagcgcgcggagtcgcgttatcgcggcggccgc
tcgcccgcctggatcaagctgaaatgccggcggcggcaggagttcgtgatcggcggctac
accgagccggcgggcagccggcacggcttcggcgcgctgctgctcggcgtgcatgcgccg
gacgcgggcggcaagcggtcacgcggcacgccgccgttgcgctatgtcggccgcgtcggc
accgggttcgacacgcgcctgctcgaccggctcgcggccatgctgcgcaagcacgagcgc
gacacgacgccgttcgacccgccgccgcacgaacggtcgcgcacgcgcgtgcactgggtc
gagccgacgctcgtcgccgaatgcgaattcgcggaatggacgggcgacgggatcgtgcgg
caggcgtcgttcatcgcgctgcgcgaagacaagccggcgcggcggatcgtccgcgaggtg
ccgcgccataccgaatcggagacgacgatggacgaaccccaggcagcgcatggcaatccg
catgcaccgcataccgataccgggcacgaccgccggccgcgcgcgcgaacgcatgcgtcc
gccggccgcgcgcccggcgaacccggcgtcgatcacgtcgaccgcgtgcgcatcacgcat
cccgatcgcgtgctcgacccgcgcagcggcacgcgcaagatcgacctcgcgcattactgg
tcatgggtcgcaccgtggctgctccccgacctgaaaggccggcccgtatcgctcgtgcgc
gcgccgggcgacatcgccggcgaactgttcttccagaagcatgcggaacgccgggaaatc
ccgttcgtcaggcagcacgaggggcttgatcccggccacggcccgctgctgtcgatcgac
agcgtcgacgcgctgctcggcgccgcgcagatgggcacgatcgagctgcacacgtggaac
gcacacgcgtcgaacatcgagcggcccgaccggatcgtgttcgacctcgatcccgatccg
gcgctgccgtggcgcgcgatgatcgacgccgcgcagatcgtgcgcgggctgctcgacgaa
ctggggctcgtgtcgttctgcaagacgagcggcggcaaggggctgcatgtcgtcgtgccg
ctcacgcggcatgcgggctgggacgacgtgaaggacttctcccgcgcggtcgcgcagcac
gtcgccgctacggtgcccgagcgcttcaccgcgacgatggggccgcgccaccggcgcggc
aggatcttcgtcgactacctgcgcaacggccgcggcgcgagcacgatcgccgcgtactcg
ctgcgggcgcggcccggcatgggcgtgtcggtgccgctcgaatgggacgaggtgcccgct
acgacgggcggcgcgcaatggacgatcgacacgctgcgcgaacggctcgacgcgctgaaa
cgcgacccgtgggaaggttatgcgcacacgcgccagcgcatcacggcgtcgatgcgtgcg
cggctcggggcgcaaacgtga
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