Burkholderia cenocepacia HI2424: Bcen2424_1944
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Entry
Bcen2424_1944 CDS
T00415
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bch
Burkholderia cenocepacia HI2424
Pathway
bch03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bcen2424_1944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bch03400
]
Bcen2424_1944
Enzymes [BR:
bch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bcen2424_1944
DNA repair and recombination proteins [BR:
bch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bcen2424_1944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ABK08695
LinkDB
All DBs
Position
1:2159223..2162693
Genome browser
AA seq
1156 aa
AA seq
DB search
MPDNASIPSASPVARVKPGQRFAFDGAHGSADALAIARYLADNRQDVPLLAVICANAVDA
QRLSQEIRYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFTGDLEASI
RRFTADTKQRHAFLAHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATALP
ELTVDRHADDPLASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLRPSSNDDFASWL
ASDARFALGVAPLANGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYSGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFSLDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTAKEVSAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEALVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRIAAKPLGIV
KIDASEVAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALGPKQGAAVAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagataacgcttccatcccgtccgcttcacccgttgcccgcgtcaagcccggccag
cgtttcgccttcgacggcgcgcacggctccgccgacgcgctcgccatcgcccgttatctc
gccgacaaccgccaggacgtgccgctcctcgcggtgatctgcgcgaacgcggtcgacgcg
cagcggctgtcgcaggaaatccgctacttctcgcccgacgcgcgcgtgcgcctgctgccc
gactgggaaacgctgccgtacgacacgttctcgccgcaccaggacctcgtgtccgagcgg
ctggccacgctgcacgacctcggcgagggccgctgcgacatcctgctcgtgcccgccacc
accgcgctgtaccggatgccgcccgcgtcgttcatggccgcgtacacgttcgcgttcgcg
cagggcgagcggctcgacgaggcgaagctgaaagcgcagctcacgctggccggctacgag
cacgtgagccaggtcgtgcgccccggcgaatactgcgtgcgcggctcgctgatcgacctg
tacccgatgggctcgccgctgccgtaccggatcgacctgttcgacgaccaggtcgattcg
atccgcgcgttcgatcccgacacgcagcgcagcctctacccggtgcgcgacgtgcgccta
ctgcccggccgcgagttcccgttcgacgaagccgcgcgcacggccttccgcagccgctgg
cgcgaaaccttcgaaggcgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtattacctgccgctgttcttcgacgagacggccacgctg
ttccactacctgccgcaggacgcgcacctcgtgttcaccggcgacctcgaagcgtcgatc
cgccgcttcacggccgatacgaagcagcgtcacgcgttcctcgcgcacgatcgcgagcga
ccgatcctcgagccgcagcggctgttcctgtccgacgaggatttcttcgcgttcgcgaag
ccgttcgcgcgcgtcgtgctgcccgcgcagccggccggcggctgggcgaccgccctgccc
gaactcaccgtcgaccgccatgcggacgatccgctcgcgtcgctgcgcacgttcgtcgaa
tcgtcgggcaagcgcgtgctgctgacggtcgaatcggccggccgtcgggaaacgatcctg
caactgctcgccgaacatcacctgcggccgtcgtcgaacgacgatttcgcgagctggctg
gcgagcgatgcgcgcttcgcgctcggcgtcgcgccgctcgcgaacggcttcgcggtgccg
ggcgaaggctatgcgatcgtcaccgaaaccgagctgtacggcgcgctcggccgccgcgcg
ggccgccgccggcaggaacaggcgagcaacgtcgacgcgatggtgcgcgacctgtccgag
ctgaaggtcggcgacccggtcgtccacgcgcagcacggcatcggccgctacatgggcctc
gtgtcgatggatctcggcgaaggcgagaccgaattcctgcatctcgaatactcgggcgac
agcaagctctacgtgcccgtcgcgcaactgcacgtgatctcgcgctacagcggcgccgat
cccgacagcgcgccgctgcacgcgctcggctccggccagtgggagcgcgcgaagcgcaag
gccgcgcagcagatccgcgacacggccgccgagctgctgaacctgtacgcgcgccgcgcg
gcccgtgaaggccacgcgttctcgctcgacccgcgcgactacgtgaaattcgcggaaagc
ttcggcttcgaggaaacgcccgaccaggccgcggcgatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gtcgcgctgcgcgcggcgttcatcgcggtgctgggcggcaagcaggtcgcgctgctgtcg
ccgaccacgctgctcgccgagcagcacacgcagaccttcgcggaccgcttcgcggactgg
ccggtgcgcatcgtcgagctgtcgcgcttcaagaccgcgaaggaagtgagcgcggcgatc
gctcagatcaacgaaggcagcgtcgacatcgtgatcggtacgcacaagctactgtcgtcg
gacgtgcagttcaagcgtctcggcctcgtgatcatcgacgaggaacaccgcttcggcgtg
cgccagaaggaagcgctgaaggcgctgcgcgcggaagtcgacgtgctgacgctcaccgcg
acgccgatcccgcgtacgctcgggatggcgctcgaagggctgcgcgatttctcggtgatc
gcgaccgcgccgcagaagcggctcgcgatcaagaccttcgtgcgccgcgaggaagaaagc
gtgatccgcgaggcgatgctgcgcgaactgaagcgcggcggccaggtgtacttcctgcac
aacgaagtcgagacgatcgagaaccgcaaggcgatgctcgaggcgctcgtgcccgaggcg
cgcatcgtgatcgcgcacggccagatgcacgagcgcgaactcgaacgcgtgatgcgcgat
ttcgtcgcgcaacgcgcgaacgtgctgctgtgcacgaccatcatcgagaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcaccgcgcggacaagttcggcctcgcgcagctg
caccagttgcgcggccgggtcggccgctcgcaccaccaggcctacgcgtacctgctggtg
cacgatccgcagtcgctgaccaagcaggcgcagcgccggctggaagcgatccagcagatg
gaggaactcggctcgggcttctatctcgcgatgcacgacctggagatccgcggcaccggc
gaagtgctcggcgacaagcagtcgggcgaaatccacgagatcggcttccagctctatacg
gacatgctgaacgacgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcc
ccgctcgccgcgacgaccgaaatcaacctgcatgcgcccgcgatcctgccggccgattac
tgcgcggacgtgcaggagcggctgtcgctgtacaagcggctcgcgaactgcgagcacggc
gacgcgatcgacggcatccaggaagagctgatcgaccgtttcggcaagctgccgccgcag
gcgcacgcgctcgtcgagacgcaccggctgcggatcgccgcgaagccgctcggcatcgtg
aagatcgacgcgagcgaggtcgcgatcgggctgcagttcgagccgaatccgccgatcgac
ccgatgcggatcatcgagatggtgcagaagcatcgccacatcaagctcgcgggccaggac
aagctgcgcatcgagacgcgctcgcccgatctcgcgatccgcgtgtcgacgatcaaggaa
acgctgcgcgcgctcggcccgaaacagggggcggccgtcgcggcccgctga
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