Brevibacillus choshinensis: JNE38_18455
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Entry
JNE38_18455 CDS
T07271
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bchs
Brevibacillus choshinensis
Pathway
bchs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bchs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JNE38_18455 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bchs03400
]
JNE38_18455 (ligD)
Enzymes [BR:
bchs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JNE38_18455 (ligD)
DNA repair and recombination proteins [BR:
bchs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JNE38_18455 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QRG65585
LinkDB
All DBs
Position
3663302..3664204
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AA seq
300 aa
AA seq
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MPTAAKEYELTLDGHTMMITNPYKPLWPEANVTKLDYIRYLLLVSSPLLAYAKNRLLTVI
RYPHGIHDKHFYQKNAPEYSPPWLMTSVWENTRYVLCNDQATLIWMANQAALEWHVSFHH
AQDEMPTELVFDLDPSTDDFSVVIEAALLLKELLDELQLPSIVKTSGASGLQIYIPIELR
YSFEQTREVGQFIASYLVSKHPKLVTIERLIKNRGTKLYIDYLQHWRGKTLPAPYSTRAK
MHATVSTPLHWREVPHIHPTDFTVHNVPDRLKKEGDLFAAVSFPSQRASLDAILSILHQR
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
ttgccaaccgcagccaaagagtacgagctgaccctcgacggccacacgatgatgattacg
aacccgtataaaccgctttggcctgaggcgaatgtcaccaaactggactacatccggtat
ttgctgcttgtctcctccccccttctcgcctatgcgaagaacaggcttctgactgtcatt
cgttatccgcacggaatccatgacaagcatttttaccaaaagaatgctcccgagtactcc
ccgccgtggcttatgacgagtgtctgggaaaatacgcgctacgtgctgtgcaatgaccaa
gccacactcatctggatggccaaccaagcagcactggaatggcatgtttcctttcaccac
gcgcaggatgagatgcctaccgagctggtattcgacttggatccttctacagatgatttc
tccgtggtaatcgaagcggccctgcttctaaaagagctgctcgacgaactgcagctgccg
tccatcgtaaaaacgtcgggagcgagcggtctgcaaatctacattccgatcgagcttcgc
tattcatttgagcagactcgggaggtcggacagttcatcgcttcttatctggtgagtaaa
cacccgaagctggtcacgattgaaagattgatcaaaaatcgcggaacgaaattgtacatc
gactacctgcagcattggcggggaaaaacattacccgctccctactcgacgcgggcaaaa
atgcatgcaacggtatcgactcctttgcattggcgtgaagtaccccatattcatccgact
gatttcaccgtacacaatgtgccagatcgactaaaaaaagagggagatctgtttgccgcc
gtgtctttcccctcccaacgagcttcgttggatgcgatcctctcgatcttgcaccagaga
tga
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