Burkholderia cenocepacia J2315: BCAL2017
Help
Entry
BCAL2017 CDS
T00771
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcj
Burkholderia cenocepacia J2315
Pathway
bcj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BCAL2017 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcj03400
]
BCAL2017 (mfd)
Enzymes [BR:
bcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCAL2017 (mfd)
DNA repair and recombination proteins [BR:
bcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BCAL2017 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
CAR52317
UniProt:
B4EC24
LinkDB
All DBs
Position
1:2223849..2227343
Genome browser
AA seq
1164 aa
AA seq
DB search
MHATPVVPMPDNASTPSASPVARVKPGQRFAFDGAHGSADALAIARYLADNRQDVPLLAV
ICANAVDAQRLSQEIRYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRC
DILLVPATTALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYC
VRGSLIDLYPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA
RTAFRSRWRETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVF
TGDLEASIRRFTADTKQRHAFLAHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPA
GGWATALPELTVDRHADDPLASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLRPAS
NDDFASWLASDERFALGVAPLANGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVD
AMVRDLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYSGDSKLYVPVAQLHV
ISRYSGADPDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFSLDPR
DYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLG
GKQVALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVI
GTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALE
GLRDFSVIATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAM
LEALVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRA
DKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMH
DLEIRGTGEVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHA
PAILPADYCADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRI
AAKPLGIVKIDASEVAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLA
IRVSTIKETLRALGPKQGAAVAAR
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
gtgcacgccacccctgtcgtccctatgccagataacgcttccaccccgtccgcttcaccc
gttgcccgcgtcaagcccggccagcgtttcgccttcgacggcgcgcacggctccgccgac
gcgctcgccatcgcccgttatctcgccgacaaccgccaggacgtgccgctcctcgcggtg
atctgcgcgaacgcggtcgatgcacagcggctgtcgcaggaaatccgctacttttcgccc
gatgcgcgcgtgcgcctgctgcccgactgggaaacgctgccgtacgacaccttctcgccg
catcaggacctggtgtccgagcggctcgcgacgctgcacgacctcggcgagggccgctgc
gacatcctgctcgtgcccgcgaccaccgcgctgtaccggatgccgcccgcgtcgttcatg
gccgcgtacacgttcgcgttcgcgcagggcgagcggctcgacgaggcgaagctgaaggcg
caactcacgctggccggctacgagcacgtgagccaggtcgtgcggcccggcgaatactgc
gtgcgcggctcgctgatcgacctgtacccgatgggctcgccgctgccgtaccggatcgac
ctgttcgacgaccaggtcgattcgatccgcgcgttcgatcccgatacgcagcgcagcctc
tacccggtgcgcgacgtgcggctgctgcccggccgcgagtttccgttcgacgaagccgcg
cgcacggcgtttcgcagccgctggcgcgaaaccttcgaaggcgacccgagccgcgcgccg
atctacaaggacatcggcaacggcgtgccgtcggccggcatcgagtattacctgccgctg
ttcttcgacgagacggccacgctgttccactacctgccgcaggacgcgcacctcgtgttc
accggcgacctcgaggcgtcgatccgccgcttcacggccgacacgaagcagcgtcacgcg
ttcctcgcgcacgatcgcgagcggccgatcctcgagccgcagcggctgttcctgtccgac
gaggatttcttcgcgttcgcgaagccgttcgcgcgcgtcgtgctgcccgcgcagccggcc
ggcggctgggcgaccgccctgcccgagctcaccgtcgaccgccatgcggacgatccgctc
gcgtcgctgcgcacgttcgtcgaatcgtcgggcaagcgtgtgctgctgacggtcgaatcg
gccggccgccgcgagacgatcctgcaactgctggccgaacaccacctgcgccccgcgtcg
aacgacgacttcgcgagctggcttgcaagcgacgaacgcttcgcgctcggcgtcgcgccg
ctcgcgaacggcttcgcggtgccgggcgaaggctatgcgatcgtcaccgagaccgagctg
tacggcgcgctcggccgccgcgcgggccgtcgtcggcaggagcaggcaagcaacgtcgac
gcaatggtgcgcgacctgtccgagctgaaggtcggcgacccggtcgtccacgcgcagcac
ggcatcggccgctacatgggcctcgtgtcgatggatctcggcgaaggcgaaaccgaattc
ctgcatctcgaatactcgggcgacagcaagctctacgtgccggtcgcgcaactgcacgtg
atctcgcgctacagcggcgccgatcccgacagcgcgccgctgcatgcgctcggctccggc
cagtgggagcgcgcgaagcgcaaggccgcccagcagatccgcgatacggccgccgagctg
ctgaacctgtacgcgcgccgcgcggcccgcgaaggccacgcgttctcgctcgacccgcgc
gactacgtgaaattcgcggaaagcttcggcttcgaggaaacgcccgaccaggccgcggcg
atcgcggccgtgatcggcgacatgacgagcggcaagccgatggaccgcctcgtgtgcggc
gacgtcggcttcggcaagaccgaggtcgcgctgcgcgcggcgttcatcgcggtgctgggc
ggcaagcaggtcgcgctgctgtcgccgaccacgctgctcgccgagcagcacacgcagacc
ttcgccgaccgcttcgcggactggccggtgcgcatcgtcgagctgtcgcgcttcaagacc
gcgaaggaagtgaatgcggcgatcgcgcagatcaacgaaggcagcgtcgacatcgtgatc
ggcacgcacaagctgctgtcgtcggacgtgcagttcaagcgtctcggcctcgtgatcatc
gacgaggaacaccgcttcggcgtgcgccagaaggaagcgctgaaggcgctgcgcgcggaa
gtcgacgtgctgacgctcaccgcgacgccgatcccgcgtacgctcgggatggcgctcgaa
gggctgcgcgatttctcggtgatcgcgaccgcaccgcagaagcggctcgcgatcaagacc
ttcgtgcgccgcgaggaggaaagcgtgatccgcgaggcgatgctgcgcgagctcaagcgc
ggcggccaggtgtacttcctgcacaacgaagtcgagacgatcgagaaccgcaaggcgatg
ctcgaggcgctcgtgcccgaggcgcgcatcgtgatcgcgcacggccagatgcacgagcgc
gagctcgaacgcgtgatgcgcgatttcgtcgcgcagcgcgcgaacgtgctgctgtgcacg
accatcatcgagaccggcatcgacgtgccgagcgcgaacacgatcatcatgcaccgcgcg
gacaagttcggcctcgcgcagcttcaccagttgcgcggccgcgtcggccgctcgcaccac
caggcctacgcgtacctgctggtccacgatccgcagtcgctgaccaagcaggcgcagcgc
cgcctggaagcgatccagcagatggaggaactcggctcgggcttctatctcgcgatgcac
gacctcgagatccgcggcaccggcgaagtgctcggcgacaagcagtcgggcgaaatccac
gagatcggcttccagctctatacggacatgctgaacgacgcggtgaaggcgctgaagaac
ggcaaggagcccgacctcaccgccccgctcgccgcgacgaccgaaatcaacctgcatgcg
cccgcgatcctgccggccgactactgcgcggacgtgcaggagcggctgtcgctgtacaag
cggctcgcgaactgcgagcacggcgacgcgatcgacggcatccaggaagagctgatcgac
cgcttcggcaagctgccgccgcaggcgcacgcgctcgtcgagacgcaccggctgcggatc
gccgcgaagccgctcggcatcgtgaagatcgatgcgagcgaggtcgcgatcgggctgcag
ttcgagccgaatccgccgatcgatccgatgcggatcatcgagatggtgcagaagcatcgc
cacatcaagctcgcgggccaggacaagctgcgcatcgagacgcgctcgcccgatctcgcg
atccgcgtgtcgacgatcaaggaaacgctgcgcgcgctcggcccgaaacagggggcggcc
gtcgcggcccgctga
DBGET
integrated database retrieval system
