Heyndrickxia coagulans 2-6: BCO26_1265
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Entry
BCO26_1265 CDS
T01527
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bck
Heyndrickxia coagulans 2-6
Pathway
bck03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bck00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BCO26_1265 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bck03400
]
BCO26_1265 (ligD)
Enzymes [BR:
bck01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BCO26_1265 (ligD)
DNA repair and recombination proteins [BR:
bck03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BCO26_1265 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AEH53324
UniProt:
F7Z7D1
LinkDB
All DBs
Position
complement(1316819..1318660)
Genome browser
AA seq
613 aa
AA seq
DB search
MKPMLPVLKWSLPDTGKWVYEIKYDGYRAILDWTEDGMRLWSRNGKDLLPRFPEIRTFLQ
TLEGRVKGQLPLRLDGELVLLENPYKAGFRELQRRGRMKAEAAAEQAKMRPAHYLVFDLL
MLGGEDMAGKPYLQRKKALENLCETLALPLSPAPGETARVQQIPFTRDASVLKETVKNFN
SEGIVAKQTDSKWEAGKRVETWIKVKNWKTAACFITAYDEKNGYFDVAVFKDGGIFPIGQ
FLFSMNPDEKQILAEAVRKNAANNENGVYTIDPSICVEVFYLEWDGANLREPHFHRFRFD
LSPDACTFEDFRLRNAAIPEEVEVTHPDKPLWKKRHVAKLDFLAYMREISPFMLPFLSDR
LLTVIRYPHGVFGEAFYQKNCPDYAPAFVDTAMHEDIRYIVCNHLKTLMWLANQLAVEYH
IPFQTVNSRFVSEIVFDFDPPSRDAFQLAVEAALLLKQVTDALHLESFVKISGNKGLQVY
IPLPDGQFSWEDTRLFTEFVAAYFISKSPEHFTIERMKKKRGGKLYVDFVQHAEGKTIIA
PYSMRGHEDALVAAPLFWEEVNASLSPYDFTIETVLSRVNRYGCPFARFFACKSGQPFAP
VLAFLKQNKGRPI
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgttgccggttttaaaatggtctctgccagatacaggaaagtgggtatac
gaaattaaatatgacggttatcgcgcgatcctcgactggacagaagacggcatgcggtta
tggagccgcaacggaaaagatttgctgccccggtttccggaaatccgcacctttttgcaa
acgcttgaaggccgcgtaaaagggcagcttccgttacggcttgatggcgaacttgtgctg
cttgaaaatccgtataaagctggctttagggagctgcaacgccgcgggcggatgaaagct
gaagcagctgcagagcaggcgaaaatgcgccccgcccattatctcgtatttgatttgctc
atgcttggcggagaggatatggccggcaaaccgtatttgcagcgaaaaaaagcattggaa
aacttatgtgaaacgctcgcgctgccgctctcccccgccccgggcgaaacggcacgggtt
cagcaaatcccgttcacccgtgacgcatcggtcttaaaagagacggtgaaaaattttaac
agtgaaggcattgtcgcaaaacaaacggacagcaagtgggaagcgggaaaacgggttgaa
acatggataaaagtgaaaaattggaagacagccgcctgctttattacggcttacgacgag
aaaaacgggtatttcgatgtcgcagtgtttaaagatggcggcatttttccaatcggccag
tttcttttcagcatgaatccggacgaaaaacaaatcctcgcagaagcggtcaggaaaaat
gccgcaaacaatgaaaacggcgtctacacgatcgatccttcgatttgcgtcgaggtattt
tatttggaatgggacggcgccaacctgcgggaaccgcatttccaccgcttccgctttgat
ctttccccggatgcctgtacatttgaagatttcaggctccgtaacgccgccattccagaa
gaagtggaagtgacacatccggataaaccactatggaaaaagcggcatgtggcaaaactc
gactttcttgcttatatgcgggaaatttccccttttatgctgccgtttctttcggacagg
cttttgaccgtcatccgttacccgcacggcgtcttcggcgaggcattttaccagaaaaac
tgccccgattatgcgcccgcttttgtggatacggctatgcatgaagacatccggtatatt
gtctgcaaccatttaaaaacactgatgtggcttgcgaaccagctggcggtggaataccat
atcccgtttcagaccgtaaacagccgtttcgtcagtgagattgtatttgattttgacccc
ccttcccgggatgcgtttcaacttgcagtagaagcggctttgctgttaaaacaggtgacg
gatgcccttcatttggagagctttgtcaaaatttccgggaataaagggctgcaagtctac
attccattgccggacgggcagttctcatgggaagatacaaggctgttcacggaatttgtg
gctgcttatttcatttctaaatctcctgaacattttacaatcgaacggatgaagaaaaaa
cggggcggaaaattatatgttgatttcgtccagcatgcggaaggaaaaacgatcattgca
ccttattcgatgcgcgggcatgaggatgcgcttgtggcggctccgcttttctgggaagaa
gtaaacgcgtcgctttcgccgtatgactttactattgaaacggtcctttcgcgtgtgaac
cggtacggctgcccgtttgcgcgattctttgcctgcaaaagcggccagccttttgccccg
gtacttgcatttttaaagcagaacaaagggcgccccatatag
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