Alkalihalobacillus clausii: ABC1601
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Entry
ABC1601 CDS
T00228
Name
(GenBank) conserved hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcl
Alkalihalobacillus clausii
Pathway
bcl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ABC1601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcl03400
]
ABC1601
Enzymes [BR:
bcl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ABC1601
DNA repair and recombination proteins [BR:
bcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ABC1601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BAD64136
UniProt:
Q5WHL9
LinkDB
All DBs
Position
complement(1724821..1726629)
Genome browser
AA seq
602 aa
AA seq
DB search
MKPMKLTETTAFPQSTGWVAEPKYDGYRCLVSITDTSIELISRNGRLLNHAFPEVVSAFE
ERRTKLSNELPLVLDGELVCLLNGYASHFPAVQTRSRMSNVHVIEKEMVSRPCQWIAFDI
LNQPNVPYRERRKQLLSFCKRADIPALTPLGGVPTLGVVESTSAIQALLTTVKRYNGEGI
VLKKQLSPYNQNIRSKDWLKLKHYRLVPVLVTFFDATNGYFHGSVYHQQGALNEVAIFKH
GLLPDDAKTLANFFRTKGTAEKNGFRLAPSIVVELACIGLSGGQLREVSFVRFLHHADPN
DITMTTLFHGLYPLPDIVETTSLDKPLWEQVTKADYLHYLQAVMPFMLPFLYQRALTVIR
FPHGTFANERFYQKHIPNYAPAYVNSAWLEDICYILCNNPETLIWLGNQLALELHIPFQT
IESSKPDEIVFDLDPPSQDQFGLAQEAALDMKQIFNRFQLPFFCKTTGGKGLQVHIPLEK
QTLTYEETGRFMKFVADFLCQQKPGKYTTERLKKKRRNRLYIDYVQHAYNKTVIAPYSMR
ETGFAAVPLREDELASPTLSPQQFSYVDVLRRIQQFENPFIGYERERVSKERFIQLLDEI
GI
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgaaactgacggagacgaccgcatttcctcagtcaacaggctgggttgca
gagcctaaatacgatggctatcgttgccttgtctccattacagacacgagcattgagcta
ataagccgtaacgggcgattgctaaaccacgctttccctgaagttgtaagtgcttttgaa
gaaaggcgaacaaaactttcaaacgagttgccgctcgtattagatggagagcttgtttgt
ttgctgaatggctacgcaagtcattttcctgccgtccaaacccgttcgcgcatgagcaat
gttcatgtaatcgaaaaggaaatggtaagcaggccttgccaatggatagcctttgacata
ctgaaccaacctaatgttccttatcgagaaaggcgcaaacagttgttatcattctgcaaa
cgtgccgacattcccgccctcactccattaggcggtgtcccgacacttggtgtggttgag
tcgacaagcgctattcaagcgctccttacgaccgttaaacgttataatggcgaagggatt
gtccttaaaaaacagctaagcccctacaatcaaaatattcgttcaaaagattggctaaaa
ctgaaacattaccggcttgtacctgttcttgttacattttttgatgccacgaatggctat
tttcacggcagcgtttatcaccaacaaggggcgttaaatgaagtcgctatttttaagcac
ggccttttgccagacgatgccaaaacgttagccaatttttttagaacaaaaggaacggct
gaaaaaaatgggtttcgcctcgctccatcaatcgtcgttgagctcgcttgcattggcctt
tctggtggacaactccgtgaagtctcctttgtccgctttttgcatcatgctgatccaaac
gacatcaccatgaccacgctgtttcatggtctgtacccattgccagatattgtagagacg
acaagtttggataaaccgttatgggaacaggtcacaaaagcggattaccttcattatttg
caagctgttatgccttttatgctgccttttttatatcaacgagcgcttactgttattcgg
tttccccatgggacgtttgcaaatgagcgtttttaccagaaacatattccaaattatgcg
cctgcttatgtcaactcagcttggttagaagacatttgttatattttgtgcaacaatcca
gaaacgcttatatggctcggaaaccaactggcgttggaactccatattccgtttcaaacg
attgaatcaagcaaaccagatgaaattgtctttgatctcgatccacctagccaagatcag
tttggccttgcccaggaagcagcactggacatgaaacaaattttcaatcgatttcaactc
ccctttttttgcaaaacgactggaggaaaaggcctgcaagtacacattccattggaaaaa
cagacccttacttatgaggaaacaggccgcttcatgaaatttgtcgcagattttctctgc
caacaaaagccaggcaagtatacgacggaacgactcaaaaaaaagcgacggaaccgtctc
tatatcgactacgttcagcatgcttataacaaaacggtcattgccccatactccatgaga
gagaccggctttgccgccgttcctttgcgagaagacgaattagcatcgccaaccctttcg
cctcagcaattttcatacgttgatgtgcttaggcgcatccaacaatttgagaacccgttt
attggctacgaacgagaacgagtaagcaaagaacgctttatccaattgctcgatgagatt
ggcatatag
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