Burkholderia orbicola: Bcenmc03_1968
Help
Entry
Bcenmc03_1968 CDS
T00669
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcm
Burkholderia orbicola
Pathway
bcm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bcenmc03_1968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcm03400
]
Bcenmc03_1968
Enzymes [BR:
bcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bcenmc03_1968
DNA repair and recombination proteins [BR:
bcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bcenmc03_1968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ACA91129
UniProt:
B1JTX2
LinkDB
All DBs
Position
1:2188437..2191907
Genome browser
AA seq
1156 aa
AA seq
DB search
MPDNASIPSASPVARVKPGQRFAFDGAHGSADALAIARYLADNRQDVPLLAVICANAVDA
QRLSQEIRYFSPEARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFTGDLEASI
RRFTADTKQRHAFLAHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATGLP
ELTVDRHADDPLASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLRPSSNDDFASWL
ASDARFALGVAPLSNGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYSGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFSLDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEALVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRIAAKPLGIV
KIDASEVAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALGPKQGAAVAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagataacgcttccatcccgtccgcttcacccgttgcccgcgtcaagcccggccag
cgtttcgccttcgacggcgcgcacggctccgccgacgcgctcgccatcgcccgttatctc
gccgacaaccgtcaggacgtgccgctcctcgcggtgatctgcgcgaacgcggtcgacgcg
cagcggctgtcgcaggaaatccgctacttctcgcccgaggcgcgcgtgcgcctgctgccc
gactgggaaacgctgccgtacgacacgttctcgccgcaccaggacctcgtgtccgagcgg
ctggccacgctgcacgacctcggcgagggccgctgcgacatcctgctcgtgcccgccacc
accgcgctgtaccggatgccgcccgcgtcgttcatggccgcgtacacgttcgcgttcgcg
cagggcgagcggctcgacgaggcgaagctgaaggcgcagctcacgctggccggctacgag
cacgtgagccaggttgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctg
tacccgatgggctcgccgctgccgtaccggatcgacctgttcgacgaccaggtcgactcg
atccgcgcgttcgatcccgacacgcagcgcagcctctacccggtgcgtgacgtgcgcctg
ctgcccggccgcgagttcccgttcgacgaagccgcgcgcacggccttccgcagccgctgg
cgcgaaaccttcgaaggcgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtattacctgccgctgttcttcgacgagacggccacgctg
ttccactacctgccgcaggacgcgcacctcgtgttcaccggcgacctcgaagcgtcgatc
cgccgcttcacggccgatacgaagcagcgtcacgcgttcctcgcgcacgatcgcgagcgg
ccgatcctcgagccgcagcgcctcttcctgtccgacgaggatttcttcgcgttcgcgaag
ccgttcgcgcgcgtcgtgctgcccgcgcagccggccggcggctgggcgaccggcctgccc
gagctcaccgtcgaccgccatgcggacgatccgctcgcgtcgctgcgcacgttcgtcgaa
tcgtcgggcaagcgcgtgctgctgacggtcgaatcggccggccgtcgggaaacgatcctg
caactgctcgccgaacatcacctgcggccgtcgtcgaacgacgatttcgcgagctggctg
gcgagcgatgcgcgcttcgcgctcggcgtcgcgccgctctcgaacggcttcgcggtgccg
ggcgaaggctacgcgatcgtcaccgaaaccgagctgtacggcgcgctcggccgccgcgcg
ggccgccgccggcaggaacaggcgagcaacgtcgacgcgatggtgcgcgacctgtcggag
ctgaaggtcggcgacccggtcgtccacgcgcagcacggcatcggccgctacatgggcctc
gtgtcgatggatctgggcgaaggcgagaccgaattcctgcatctcgaatactcgggcgac
agcaagctctacgtgcccgtcgctcaactgcacgtgatctcgcgctacagcggcgccgat
cccgacagcgcgccgctgcacgcgctcggctccggccagtgggagcgcgcgaagcgcaag
gccgcgcagcagatccgcgacacggccgccgagctgctgaacctgtacgcgcgccgcgcg
gcccgcgaaggccacgcgttctcgctcgacccgcgcgactacgtgaaattcgcggaaagc
ttcggcttcgaggaaacgcccgaccaggccgcggcgatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gttgcgctgcgcgcggcgttcatcgcggtgctgggcggcaagcaggtcgcgctgctgtcg
ccgaccacgctgctcgccgagcagcacacgcagaccttcgcggaccgcttcgcggactgg
ccggtgcgcatcgtcgagctgtcgcgcttcaagaccgcgaaggaagtgaacgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcgcctcggcctcgtgatcatcgacgaggaacaccgcttcggcgtg
cgccagaaggaagcgctgaaggcgctgcgcgcggaagtcgacgtgctgacgctcaccgcg
acgccgatcccgcgtacgctcgggatggcgctcgaagggctgcgcgatttctcggtgatc
gcgaccgcgccgcagaagcggctcgcgatcaagaccttcgtgcgccgcgaggaagaaagc
gtgatccgcgaggcgatgctgcgcgagctgaagcgcggcggccaggtgtacttcctgcac
aacgaagtcgagacgatcgagaaccgcaaggcgatgctcgaggcgctcgtgcccgaggcg
cgcatcgtgatcgcgcacggccagatgcacgagcgcgaactcgaacgcgtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtgctgctgtgcacgaccatcatcgagaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcaccgcgcggacaagttcggcctcgcgcagctt
caccagctgcgcggccgcgtcggccgttcgcaccaccaggcgtatgcgtacctgctggtc
cacgatccgcagtcgctgaccaagcaggcgcagcgccggctggaggcgatccagcagatg
gaggaactgggctcgggcttctatctcgcgatgcacgacctcgagatccgcggcaccggc
gaggtgctcggcgacaagcagtcgggcgaaatccacgagatcggcttccagctctatacg
gacatgctgaacgacgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcc
ccgctcgccgcgacgaccgaaatcaacctgcatgcgcccgcgatcctgccggccgactac
tgcgcggacgtgcaggagcggctgtcgctgtacaagcggctcgcgaactgcgagcacggc
gacgcgatcgacggcatccaggaagagctgatcgaccgtttcggcaagctgccgccgcag
gcgcacgcgctcgtcgagacgcaccggctgcggatcgccgcgaagccgctcggcatcgtg
aagatcgatgcgagcgaggtcgcgatcgggctgcagttcgagccgaatccgccgatcgat
ccgatgcggatcatcgagatggtgcagaagcatcgtcacatcaagctcgcgggccaggac
aagctgcgcatcgagacgcgctcgcccgatctcgcgatccgcgtgtcgacgatcaaggaa
acgctgcgcgcgctcggcccgaaacagggggcggccgtcgcggcccgctga
DBGET
integrated database retrieval system
