Evansella cellulosilytica: Bcell_3194
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Entry
Bcell_3194 CDS
T01389
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bco
Evansella cellulosilytica
Pathway
bco03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bcell_3194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bco03400
]
Bcell_3194
Enzymes [BR:
bco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bcell_3194
DNA repair and recombination proteins [BR:
bco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bcell_3194
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DNA_ligase_A_C
DUF5006
Motif
Other DBs
NCBI-ProteinID:
ADU31436
UniProt:
E6U0J1
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All DBs
Position
3403813..3405054
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AA seq
413 aa
AA seq
DB search
MITLNSFSKKMNYVGYFFITGMNNKTNEFTCGLLINQEVLQIGSFSDGMSEEEKKALTEI
VRKNKSSIKGSFIHIEPGIVVELTFKGIISDKLTNPVFQQFRTDLSWTVCTKGQLILLNK
NVKKEVTITNPDKPLWQSPVIVKDQYICYLHDISPFMLPFLHDRILTVRRYPHGVSGEVF
YQKNCPEYAPPFIRTHMEDDINYIVCENLSSLLWLGNQLALEFHIPFQLLHDNYPREIVF
DLDPPSREDFSLAVVAAMEMKKLFDKFNIISFPKLSGNKGLQVHVPLATSPISYEDTRVF
TSFIAHYLVETQPDLFTVERMKKNRGNRLYIDYVQHWHGKTIIAPYSTRGREGATVAAPL
FWKEVDENLNPDDYHLFSVLERVRTVGCPFAHYFEEKNEDLLEVIDSLKNKQD
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgatcactttaaatagcttctctaaaaagatgaattatgttggctacttttttattaca
ggtatgaataataagacgaatgaatttacttgtgggctattaataaatcaagaagtttta
caaatagggtctttttcagatggcatgagcgaggaagaaaaaaaagcactgaccgaaatt
gttagaaagaataaatcgtctattaaaggtagcttcattcatattgaacccggtattgta
gtagagttaacatttaaaggcattataagtgacaaattaactaacccagttttccaacaa
ttccgtaccgatttgtcatggacggtatgtactaaagggcaactcattctactaaacaaa
aatgtaaaaaaggaagtgacgataacaaatcctgataagccattatggcaatcccctgta
attgtaaaggatcaatatatatgttacctacatgatatttctccattcatgcttcctttt
ttacacgatagaatattgactgttcgcagatacccacatggtgtgagtggagaagtcttt
tatcaaaagaattgtcctgaatatgcacctccttttataagaacgcatatggaggatgat
attaattatattgtttgtgaaaatttatcatctttactttggctagggaatcagcttgca
ctagagtttcacatcccctttcagcttttacatgataactacccgagggaaattgtattt
gatttagatcctccatcgcgtgaagatttttctttagctgttgttgcagctatggaaatg
aaaaaactatttgataaatttaatattattagcttcccaaagctctctggaaataagggg
ttacaagttcatgttccattagcaacaagtccgattagctatgaagatacacgtgtattc
acttcctttatcgcacattatttagttgaaacacaacctgaccttttcacagttgaaaga
atgaaaaaaaatagagggaataggttgtacattgactatgtacagcattggcatgggaaa
accattatcgctccttattccacaagaggaagggaaggagcgacagttgctgctccactt
ttttggaaagaggtagatgaaaatttaaatccagatgactaccatctcttttctgtactt
gaacgtgtaagaactgttgggtgtccatttgctcattattttgaagaaaaaaatgaagac
ttgctagaggtcatcgattctttaaaaaataagcaagattga
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