Heyndrickxia coagulans DSM 1 = ATCC 7050: BF29_237
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Entry
BF29_237 CDS
T03712
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
bcoa
Heyndrickxia coagulans DSM 1 = ATCC 7050
Pathway
bcoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF29_237 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcoa03019
]
BF29_237 (rny)
Messenger RNA biogenesis [BR:
bcoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BF29_237 (rny)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
Propep_M14
KH_2
Exonuc_VII_L
UPF0154
Motif
Other DBs
NCBI-ProteinID:
AJH77915
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Position
239586..241148
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AA seq
520 aa
AA seq
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MESLIWIISLLLVLIVGVVVGYFIRRSIYEAKIAGAKNAADQIVDEAKREADRLKKEALL
EAKDENHKLRTDMERELRERRNELQRQENRLLQKEENLDRKDESLDKRESMLKKKEDSLN
LRQQHIEEMESKLEEMVNEQESELERISGLNREQAKAIIIEKLENELSHDIAVKVKEAET
RAKEEADKKAKSILSLAIQRCAAEHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPVRRETARIALEKLVQDGRIHPARIEEMVEKARREVDEHIR
EVGEQTTFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSIEVAFLSGLLAAELGEDEIL
ARRAGLLHDMGKAVDHEVEGSHVQIGVELATKYKEHPVVINSIASHHGDTEPTSIIAVLV
AAADALSAARPGARSETLEHYIRRLEKLEEIAESYEGVEKSFAIQAGREVRIMVKPEQID
DLEAHRLARDIRKKIENELDYPGHIKVTVIRETRAVEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggagtctctcatatggatcatctcccttttgcttgtccttatcgtcggtgtagttgtt
ggctatttcatccggagatcaatttatgaagcaaaaattgcaggggcgaaaaatgcggcg
gatcagatcgtcgatgaagcaaaacgcgaagctgaccgcctgaaaaaagaagccctgctt
gaagcgaaggatgaaaatcataaacttcgtacggatatggaacgggaattgcgtgaacga
agaaatgaattgcaaagacaggaaaaccgcttattgcaaaaggaagagaacctcgaccgc
aaagatgaatcgctcgataagcgtgaatcgatgcttaaaaagaaagaggattctttaaac
ctgagacaacaacatattgaagagatggaaagcaaattggaggagatggttaacgagcag
gagtctgagctggaaagaatctcgggcctcaatcgcgaacaggcgaaagccattattatt
gaaaaactggaaaacgagctttcccatgacattgccgttaaggtaaaggaagcggaaaca
agggcaaaagaagaagccgacaaaaaggcgaaaagcattctttcgctagccattcagcgg
tgtgcagccgagcatgttgctgaaacaacggtatcggttgtcaatttgccgaatgatgaa
atgaaaggccgcatcatcggaagggaagggcgcaatatccggacgcttgaaacgctgacc
gggattgacctgatcatcgatgatacgccggaagcggtgattctttcgggattcgatccg
gtgcgccgggaaacggcacgcattgcactggaaaaactggttcaagacggccgcatccat
ccggcccgcattgaagaaatggttgaaaaagcaaggcgggaagtggatgaacatatacgc
gaagtgggggaacaaaccacttttgaagtcggtgtccatggccttcatccggacttaatc
aaaattcttggccggttaaaattccgcacgagctacgggcaaaatgtcctcaagcactcg
atagaagtcgcattcctttccggattgctggctgccgaactcggggaagatgaaatcctt
gcccgccgtgccggcctgcttcatgatatgggaaaagcggtagaccatgaagtagaagga
agccatgtgcaaattggcgtcgaactcgcaaccaaatacaaggaacatccggtggtcatt
aacagtattgcttcccaccatggcgatacggaaccgacctctattatcgcggtgcttgtc
gctgccgctgatgctttatccgctgcacggcctggggcgcgcagcgaaacgcttgaacat
tacatcaggcggcttgaaaagctggaggaaatcgccgaatcgtatgaaggcgttgaaaaa
tcgttcgctatccaggcggggagagaagtacgcattatggtgaaaccggaacagatcgac
gacctggaagcccaccgcctggcacgtgatatccgcaaaaaaattgaaaatgagctggat
tatccgggccatattaaagtaacggtcattcgggaaacgcgggctgttgaatatgcaaaa
taa
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