Blautia coccoides: BLCOC_51770
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Entry
BLCOC_51770 CDS
T09601
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcoc
Blautia coccoides
Pathway
bcoc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BLCOC_51770 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcoc03400
]
BLCOC_51770 (mfd)
Enzymes [BR:
bcoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLCOC_51770 (mfd)
DNA repair and recombination proteins [BR:
bcoc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BLCOC_51770 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
MFD_D3
RecG_dom3_C
AAA_22
DUF3136
Motif
Other DBs
NCBI-ProteinID:
WPX76790
LinkDB
All DBs
Position
complement(5730042..5733611)
Genome browser
AA seq
1189 aa
AA seq
DB search
MQAVIQPLLNLNEYQEIRSRLPENRGVLQLSGCIESQKAHVMYGLFEGMRQDEKQKNANC
LIIAENDLKAKELYEDYRFYDRDVLFYPAKDLIFFQADIHGNLLTKQRMQVIAALLQKKG
VTVITSMGGCMDYLLPLSVIEQHVLHFKNDSVLDLGKLKKDLVNMGFEYSAQVEAPGQFA
IRGGIVDLFLLTEENPIRIELWGDEIDSIRSFETESQRSIENLEEITIYPAAEMVLTQEV
LEKGLKAIEKEKNTTVKKLREAFLTEEAARLKNAVDEAVNAMKEFEDFAAAEHFIRYFYK
DPVTFLDYFDPADTLIFLDETNRLLEKGEAVESEFRESMKNRLEKGYLLAGQTDLLCGYK
KVVYRLNRKNCVSLCTMEQQKADWEMNGQYRTVTKSVNSYNSSFELLVKDLRYWKKNGYQ
VLLLSGSRTRAQRLAQDLQEEGLSSFYTEDLNRTIAPGEIMTSYGHAKRGFEYPLIKFVL
ITETDIFGQEKKKRRKKTEYSGKKIQSFSELNVGDYVVHENHGLGIYRGIEKVTVDKIVK
DYIKIEYSGKSNLYILATQLDMLQKYAGADAKAPKLNKLGGQEWKKTKTRVRGAVKNIAK
DLVALYAVRQSQNGYQYGPDTVWQKEFEEMFPFEETEDQLNAIEAAKHDMESRKIMDRLV
CGDVGYGKTEIAIRAAFKAVQESKQVVYLVPTTILAQQHYNTFVQRMKDFPVRVDLLCRF
KTPAEQKKTISDLQKGLVDIVIGTHRLLSKDVKYKDLGLLIVDEEQRFGVTHKEKIKSLK
ENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRTPIQTYVMEYNEEMVREAVSREI
ARGGQVYYVYNRVNDIDEITNRVAKLIPEANVAFAHGQMHEHQLEKIMYGFINGEIDVLV
STTIIETGLDISNANTMIIHDADQMGLSQLYQLRGRVGRSNRTAYAFLMYKRNKMLKEVA
EKRLHAIREFTDLGSGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYDLYCKMLNEAVKEA
KGIKQQEEFETTIDLDMDAFIPPRYIPNEYQKLDIYKRIAGIENQEEYEDMLEELMDRFG
EPPKSVQNLLAIANLKALAHKVYVREIKQNGTEVKISMFERAKLDASGFPAVLEKYKNNM
TMRMEGQPYFLVSLKGRRPKEILDAMDIVSGILHEFEGILQEKEENLLP
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcagtcatacagccacttttaaatttaaatgaatatcaggagatcaggagccgt
cttcctgagaacagaggcgttctgcagctgtccggctgcattgaatcccagaaagcccat
gtaatgtacggactgtttgaagggatgaggcaggatgaaaagcaaaagaacgccaactgt
ctgatcattgcggagaacgacctgaaagcaaaagaactttatgaggactaccgtttttat
gacagggatgtgcttttttatccggcaaaggaccttattttcttccaggcggatattcac
ggcaatcttctgacaaagcagaggatgcaggtgatcgcagcccttctgcagaaaaaaggc
gtgactgtcatcaccagcatgggcggctgtatggactatctgcttccgctttcagtcatt
gaacagcatgtgctgcatttcaaaaacgacagtgtgctggatctgggaaaactgaaaaaa
gatttggtcaacatgggatttgagtatagtgcacaggtggaggcaccggggcagtttgcc
atccggggcggcattgtggacctttttcttctcacagaggagaatcccatccgtatagag
ctttggggagatgagatcgactcgatccgaagctttgagacagagagccagcgctccatt
gagaacctggaggagataaccatctatcccgcggcggaaatggtgctgacccaggaggtg
ctggagaaaggcttaaaagccatagagaaggaaaaaaacaccactgtgaaaaagctgcgg
gaggcatttctcacagaggaggcagccagactgaaaaacgcggtggatgaagctgtcaat
gccatgaaggagtttgaagactttgcggcggcggagcactttatacggtatttttacaaa
gatccggtgacttttctggactattttgacccggcagacacccttatatttctggatgag
acaaaccgtcttctggaaaaaggggaagcagtggagagtgaattccgggaaagcatgaaa
aaccgcctggaaaagggatatctactggcaggtcagacagacctgctgtgcggatacaaa
aaggtggtttaccgcctcaaccggaaaaactgcgtatctctctgtactatggaacaacag
aaggcagactgggaaatgaacggtcagtaccgcacagtgacaaagtctgtgaattcctac
aacagcagctttgagctgctggtgaaagacctgcgctattggaagaaaaacggataccag
gtacttcttctttccggttccaggacaagagcgcagagacttgcccaggaccttcaggag
gagggactcagcagcttttatacggaggacctgaacagaaccatagcgcccggcgagatc
atgacctcctacggccacgcaaagcggggatttgaatatcccctgatcaagtttgtcctg
atcaccgagaccgacattttcggccaggagaagaaaaagcgcagaaagaagacagagtac
agcggaaagaagatccagagcttttccgagctgaatgtaggcgactatgtagtccatgaa
aatcatggccttggtatttacaggggtatagagaaggtcactgtggacaaaatcgtcaag
gattatatcaagattgaatattccggcaagagcaacctctatatcctggcaacccagctt
gacatgctgcagaaatacgcaggcgcggatgcgaaagcgccaaagctcaacaaactgggc
ggtcaggagtggaagaagacaaagacaagggtaagaggtgcagtaaagaatatcgccaag
gatctggtggcactttacgcggtcaggcagtctcagaatggttatcagtatgggcctgac
actgtctggcagaaggagtttgaggaaatgtttccttttgaggagacagaggatcagtta
aacgccatcgaagctgcaaaacatgatatggagagccggaagatcatggaccgtctggtc
tgtggggatgtgggctacggcaagacagagattgccatccgcgcagccttcaaagccgta
caggaaagtaaacaggtggtatatcttgtacctaccacgattctggcgcagcagcactac
aatacttttgtacagaggatgaaggattttcctgtccgtgtggatctgctctgccgtttt
aagacaccggcggaacagaagaaaaccatatcagatctgcagaaggggctggtggatatt
gtcatcggcacccaccgtctcctctcaaaggatgtaaaatacaaggatcttggactcctc
atagtggatgaggagcagcgcttcggtgtgacacataaggagaagatcaagagcctgaag
gagaatgtggatgtgctcaccctgacagccactcccattccaagaactcttcacatgagt
cttatagggatccgtgacatgagcgttttggaagaggctcccatggacagaacccctatt
cagacctatgtcatggaatataatgaggagatggtacgtgaggcggtcagccgggaaatt
gcaaggggcggtcaggtctattacgtctataaccgggtcaacgatatagatgagatcacc
aaccgcgtggcaaagctgataccggaggcaaacgtggcatttgcccatggccagatgcat
gaacatcagcttgaaaagatcatgtacggcttcatcaacggtgagatcgacgtgctggtc
tccactaccatcattgagacaggactggatatttccaatgccaacaccatgatcatccat
gatgcggaccagatgggactgtcccagctctatcagctcagagggcgtgtaggccgctcc
aacaggactgcctatgcattccttatgtacaagagaaacaaaatgctaaaggaagtggca
gagaaacgcctccatgccatccgtgagttcacggatctgggcagcggcttcaagatagcc
atgcgtgacctggagatccgaggcgccggaaatcttctgggagcggagcagcacggccac
atggaagctgtgggatatgacctctactgtaaaatgctcaacgaggcggtgaaagaggca
aagggaatcaaacagcaggaggagttcgagacaaccatcgatctggatatggatgccttc
attccgccccgctacattcccaacgaataccagaaattggacatttacaaacgcattgcc
ggtatagagaaccaggaagaatacgaggatatgctggaagaacttatggaccggttcggg
gaacccccgaaatccgttcagaatctgcttgccatcgccaacctaaaggctcttgcccac
aaagtctatgtgcgtgagatcaagcagaacggtacagaagtgaaaatatccatgtttgag
cgggcaaaactggacgcgtcaggttttcctgctgttctggaaaaatataaaaacaacatg
accatgcgtatggagggacagccttattttctggtttccctgaaaggccgcagaccaaaa
gaaatcctggacgctatggatatcgtgtccggtattcttcatgaatttgaggggatttta
caggaaaaagaggaaaatctcttgccctga
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integrated database retrieval system
