Sutcliffiella cohnii: BC6307_09020
Help
Entry
BC6307_09020 CDS
T06787
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcoh
Sutcliffiella cohnii
Pathway
bcoh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BC6307_09020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcoh03400
]
BC6307_09020
Enzymes [BR:
bcoh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BC6307_09020
DNA repair and recombination proteins [BR:
bcoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BC6307_09020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AST91412
UniProt:
A0A223KPJ6
LinkDB
All DBs
Position
complement(1831196..1833079)
Genome browser
AA seq
627 aa
AA seq
DB search
MVNNRSNKFSLERNRITLLKPMLPTLHANAPMEKEWVYEIKYDGFRCITTINKNTISLQS
RNGQMLNDSFPEVVRFLETLSSRGLTSFPVVLDCELAVLQSDYKANFQAIQKRGRTKTQS
TVEHLAKEIPATLCAFDLLQLGTEQMMNTPYIQRKEILLKLFKQLELPENTVHLSDKLLQ
YVPFFNKYDDIWNIVLTHDSEGIIAKKTTTKWEGKRTTNWIKVKNYKIASCFITAYQKDN
GYFHIGVFDQNEKIVSIGLFSHGLTAEERSALLQVIKNNNIEENDRYIKVPPSICVDIHY
LELYDKELRHPEFKQFRLDLQPNECTISKIMEKKVNIPESVQLTHPDKPIWENPLVTKEE
YIHYLVEVAPHFLSFLKDRPLTVIRYPHGMFGESFYQKNCPDYAPNFVQTVNHENIEYIV
CNNLETLCWLGNQLAIEYHIPFQPFQHTKPSEIVFDLDPPSVDQFSYAIKAAKMMKEVFD
QLNLHSFVKTSGRKGIQVYIPLPDDTFTYEQTRTFTEFIANYLISKEPSLFTIERLKKNR
NNKLYIDYIQHWEGKTIIAPFSPRGSDFAGIAMPLYWDEVQNNLLPKQFTMKNVVQKLKE
DGDPFQSFWNVKEKQPFEPVLQFLRKV
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggtaaacaatagaagtaataagttttcgttagaaaggaatcgaattaccttgctaaaa
ccgatgctgccaacgttacatgcaaatgcaccaatggaaaaagagtgggtttatgaaata
aaatacgatggctttcgttgtattacgacgataaataaaaataccatttcccttcaaagc
cgtaacggtcaaatgttaaacgattcatttccagaagttgtccgttttttagaaacattg
agttcgcgtggattaacatcctttccagttgtacttgattgcgaattggctgttttacaa
tcggactataaagcaaacttccaagccattcaaaaaagaggtcgaacgaaaacacaatca
actgtcgaacatttagctaaagaaatacctgctacattatgcgcttttgatttattacag
cttggaacagaacaaatgatgaacacaccatatattcagcgaaaagaaatactattaaag
ctttttaaacagttagagctaccagaaaacaccgtccacctttccgataaactgctacaa
tatgttcctttttttaataagtacgatgacatttggaacatcgttcttacgcatgatagc
gaaggaataattgctaaaaagacgacaacaaaatgggaaggaaaacgaactactaattgg
attaaagtaaaaaactataagatagcttcttgcttcataactgcttatcaaaaagataac
ggttattttcatattggagtttttgatcagaatgagaaaattgtatctatcggtttattt
tcacacggtttaacggcagaagaacgcagtgcccttctccaagtaataaaaaataataat
atagaagaaaacgatcgttacataaaagtaccaccaagcatttgtgtcgatattcactat
cttgaactttacgacaaagaattacgccatcctgaattcaaacaatttcggttagacttg
caacctaatgaatgtacaataagtaagatcatggagaaaaaggtgaacattccagagagt
gtccaactaactcacccggataaaccgatatgggaaaatccacttgtcacaaaagaagaa
tatatacactatttagttgaagttgcaccacactttttatcatttttaaaggatcgcccg
ttaactgttattcggtatccgcatggaatgttcggtgaaagcttttatcaaaaaaactgt
cctgattatgctccgaattttgtacaaacagtaaatcatgaaaatattgagtatatagta
tgtaacaatttggaaacgttatgttggttaggaaatcaattagcaattgagtatcacatt
ccgtttcaaccttttcagcatacgaaacctagtgaaattgtatttgatttagatccaccg
tctgttgatcaattttcatatgcgattaaagctgcaaaaatgatgaaagaggtttttgat
cagctaaacttacattctttcgtaaaaacatctggaagaaaaggaattcaagtgtacatc
cctctacctgacgacacgttcacatacgaacaaacgagaacatttacagaatttattgca
aactatttaatttcaaaagaaccaagcctctttactatagaacgactcaaaaaaaacaga
aacaacaagctgtacatcgattacatccaacactgggaaggaaaaacaattatcgctcca
ttctcgccacgtggaagtgattttgcaggaattgcgatgcctctttattgggatgaggtg
caaaataatttattacctaaacaattcactatgaaaaatgttgtccaaaagctaaaagaa
gacggtgatccattccaaagcttttggaacgttaaagaaaaacaaccatttgaaccggtc
ttgcagtttttacgaaaagtataa
DBGET
integrated database retrieval system
