Baudoinia panamericana: BAUCODRAFT_259506
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Entry
BAUCODRAFT_259506 CDS
T03106
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
bcom
Baudoinia panamericana
Pathway
bcom03022
Basal transcription factors
bcom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcom00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
BAUCODRAFT_259506
09124 Replication and repair
03420 Nucleotide excision repair
BAUCODRAFT_259506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcom03021
]
BAUCODRAFT_259506
03400 DNA repair and recombination proteins [BR:
bcom03400
]
BAUCODRAFT_259506
Transcription machinery [BR:
bcom03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
BAUCODRAFT_259506
DNA repair and recombination proteins [BR:
bcom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
BAUCODRAFT_259506
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
CBP_CCPA
Motif
Other DBs
NCBI-GeneID:
19110363
NCBI-ProteinID:
XP_007680073
JGI:
Bauco1_259506
UniProt:
M2M8J7
LinkDB
All DBs
Position
Unknown
AA seq
489 aa
AA seq
DB search
MSSTASQRALDYLEQLPGTTFTKLYQQPSTALAIFRRMLPHLAKTLVMAMLYMPKPFAVA
DVDVWIKPDAEGLQARDRALSILQRLRILFDTRDEKDGRPAYKLSDGFARSLRMALTGGG
NHRSFGVPSNAPDKQPVSGSYLDAFARQQWEAILYYVVGSAHAGLGGSTDAISAGTKQLL
QKGEFVSVRGREAHITQRGFTFLLQEINAQIWTLLIVYLEVSGALHMDPVDVLSFLFTLG
SLELGISYSTTNLTPTQQQMLDDLSDFGLVYRRSNDEARYYPTRLATTLTSDAPALPNTS
LTSTTSTTTLASSSTDPSASANEKGYIILETNYRLYAYTSSPLPITILSLFATLKTRYPN
LITAKLTKSSIQSAIASGITSDQIITYLTTHAHPILRRQNPVLPPTVVDQIRLWQIEGER
MTAWKGFLIRDVGTAEEYDKAVQYADALGVLRKEFRGKGWFFVSRMDQMSVYFRAQAAKK
KEAMARREG
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgacggcgtcgcagcgtgcgctcgactacctcgagcagctgccgggcaccacc
ttcaccaagctgtaccaacagccctccaccgccctcgccatcttccgccgcatgctgcct
cacctggctaaaacactcgtgatggcgatgttgtatatgcccaaacccttcgccgtcgcc
gacgtagatgtgtggatcaagcccgatgccgagggtctgcaggcgagagatagagcgctc
agtatcctgcagcgcctgcgcattctattcgacacgcgtgatgagaaggatggccgtccg
gcgtacaaactcagtgatggttttgcgcgcagtctgaggatggcgctcacgggtggtggc
aatcaccggtcctttggcgtgcccagcaatgcgccggataaacaacccgtctccggctcg
tacttggatgcctttgcgcgccagcagtgggaagccatcctctactacgtagtcggcagt
gcgcacgcaggcctcggcggctccacggatgccatcagcgccggcacaaagcaactactc
cagaaaggcgaattcgtctcagtccgtggccgcgaagcacacatcacccaacgcggcttc
acattcctactacaagagatcaacgcgcaaatatggacgctcttaatcgtctacctcgag
gtctccggcgccttacacatggaccccgttgacgtcctatccttcctcttcaccctcggc
tccctcgagttaggcatcagctacagcaccaccaacctcaccccaacccaacaacaaatg
ctcgacgacctctccgacttcggcctcgtctaccgccgcagcaatgacgaagcccgctac
tacccgacccgccttgctacaaccctaacaagcgacgccccggccctccccaacacctcc
ctaacctccaccacaagcaccaccaccctcgcctcctcttcaaccgaccccagcgcgagt
gcaaacgaaaagggctacataatcctcgagacaaactaccgcctctacgcctacacctcc
agccccctacccatcacaatcctctccctcttcgccaccctcaaaacccgctaccccaac
ctcattaccgccaaactcaccaaatcctccatccaatccgccatcgcctccggcatcaca
agcgatcagataataacctacctgaccacgcacgcccaccccatcttgcgccggcagaac
ccggtcttaccacccacagtcgtggatcagatcagactctggcagatcgagggcgagcgg
atgacggcgtggaaggggtttttgatcagggatgtggggacggcggaggagtacgataag
gcggtgcagtatgcggatgcgctgggggtgttgcggaaggagtttagggggaaggggtgg
ttttttgtgagtcggatggatcagatgagtgtttactttcgggcgcaggcggccaagaag
aaggaggcaatggcgaggagggagggttga
DBGET
integrated database retrieval system
