Baudoinia panamericana: BAUCODRAFT_33665
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Entry
BAUCODRAFT_33665 CDS
T03106
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bcom
Baudoinia panamericana
Pathway
bcom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bcom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
BAUCODRAFT_33665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcom03021
]
BAUCODRAFT_33665
03019 Messenger RNA biogenesis [BR:
bcom03019
]
BAUCODRAFT_33665
Transcription machinery [BR:
bcom03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
BAUCODRAFT_33665
Messenger RNA biogenesis [BR:
bcom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
BAUCODRAFT_33665
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
VHS
zf_UBZ
zf-C2HC_2
Motif
Other DBs
NCBI-GeneID:
19112196
NCBI-ProteinID:
XP_007676056
JGI:
Bauco1_33665
UniProt:
M2NB02
LinkDB
All DBs
Position
Unknown
AA seq
702 aa
AA seq
DB search
MSALSPRGSISGTSDVAVDFEDSLRDLSRNDRYEIGNLTSIAREYTEYAQAISRVLENHI
KTTAPNKKLPALYVLDSIVKNVGTPYTVYLGRNLYSTFMEAYTLVDGMTRRAMDSLLKTW
KEPVPGSMDHRPVFPPEIVRPIENALIKAKTAALQNQRQVQQPPYRSTPTPPQYNGQYAV
PPTPNQHEQYPQYVYGNSQAAPPQQQWQPAMPPPTPQQQPPFLSLNPAARPMIDVSTLRA
DISALISRLQMAFAASPSDQGLITQLHALLKLKQVVDSGAVPDAALQEVRTKVTALAAVA
PDPRRSPQPPVPTPQWQATPAMQQPAPYQPPASVSQAYQYPGSGTLPFAQPAASMLNHTA
PPLLAPNALNGLQALLANGQKPSTPQMRTAVPALQNMPHTQLNNVQNNITAAPTSNTADL
LAALSKSGVLSSLPSTTPQTAPAQNSTLPPPNTSSTTSLLASLQSILPPSQNSTPTTHAA
QPAGTQSKAAIPISNSALKTFRPELVQALYDNQPNQCSTCGRRFLATEEGRAKKQRHLDW
HFRTNQRLADPNASRGQHRQWFLDEVEWISIPEFDPSTASAADTTAAATVQKKRGAQDQY
IRAPAGITRLTCTVCQEEMKSSYSEELQDWVFTNAVYYNGKPAHATCVEEMKKPWGGGGG
GSLAAALSMTGQRQRSATPESSLGKRKAEGTLAGNGARLKTG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccctgtcgccgagaggttccatttcgggcacctctgatgttgcggttgacttt
gaagactcgttacgagatttatcgcggaacgaccgatatgagattgggaacctcacgagc
atagcacgagagtataccgagtatgcgcaagcaatctcgagagtgctcgaaaaccacatc
aaaacaaccgccccgaacaaaaagttgcccgctttgtacgttcttgacagcatcgttaag
aatgtcggaacgccgtataccgtataccttggccggaatttgtacagcacgtttatggag
gcgtacactttggtggatggcatgactcgacgggccatggacagtctgctcaagacttgg
aaggaacctgttcctggttctatggatcaccgacccgtctttcctccggaaatcgttcgt
ccgatcgagaacgcgcttatcaaggcgaagacagcagctttgcaaaatcaaagacaagtg
cagcagccgccatacagaagtactccaactccaccacaatacaatggccagtatgcagta
cctccgacacccaatcaacacgaacagtatccgcaatacgtttacggcaacagccaggcg
gctccaccacaacaacagtggcagcccgcaatgcctcctccgacaccacaacagcagccg
cccttcctctcattgaatcctgcggcgcggccgatgatagatgtcagcaccctcagagca
gatattagtgctctcatttcgcgtttgcagatggcgttcgccgcctccccgagtgatcaa
ggcctgatcacccagcttcatgcgcttttgaagttgaagcaagtcgtggattctggagcc
gttccagatgccgcactgcaagaagtcagaaccaaggtgacagcactggcagccgtggcc
ccggatccacggcgtagtccgcagccgccggtacctacgcctcagtggcaagccacgcca
gcgatgcaacagccagcgccataccaaccaccggcttcggtgtcacaagcttatcaatac
cctgggtcaggcaccttaccattcgcgcaacctgctgcatcaatgctgaaccatacagcg
ccgccgcttcttgcgccaaacgcactcaacggactgcaagcattgcttgcaaacggacag
aagccaagcacaccgcagatgcgcacagccgtccctgctctgcagaatatgccccatact
cagctaaacaacgttcagaacaacatcacggcagcgccgacaagcaacacagccgacctg
ctcgccgctctaagcaaaagtggcgtgctaagcagcctcccttccaccacaccacagacg
gctccggcacagaacagtacgctaccaccaccaaatactagttcgacaacgtctctactc
gcatccctacaatcaatcctgccgccttcgcaaaacagcacgcctactacccatgcagcg
cagcccgcaggaacacaaagcaaggccgcaatacccataagtaattcagcactaaagaca
tttcgtcctgagcttgtgcaggccctttatgacaaccagcccaaccagtgctcaacttgc
ggtcgccgcttcctggccaccgaagaaggccgagcgaagaagcagcggcacttggactgg
cacttccgtacgaaccagcgcctcgcagaccccaacgccagccgaggacagcaccgccaa
tggttcctagacgaggtggagtggatcagcatcccagagtttgaccctagcacggcgtca
gcggcggatactactgcggctgccacggtgcagaagaagcgtggagcgcaggaccagtac
atccgtgctccggctggcattactcggttgacctgtacggtgtgtcaggaggagatgaaa
agtagctacagtgaggagctgcaagattgggtgttcaccaacgccgtgtactataatgga
aagcctgcgcatgcgacttgcgtggaggagatgaagaagccatggggtggtggtggagga
ggctcgctggcggctgcgctgagcatgactggtcagaggcaaaggagtgcaacgccagaa
agctcgctggggaaacggaaggcggaaggcacactggctggtaacggggcacggctcaag
acaggctag
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integrated database retrieval system
