Baudoinia panamericana: BAUCODRAFT_78782
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Entry
BAUCODRAFT_78782 CDS
T03106
Name
(RefSeq) hypothetical protein
KO
K14328
regulator of nonsense transcripts 3
Organism
bcom
Baudoinia panamericana
Pathway
bcom03013
Nucleocytoplasmic transport
bcom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bcom00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
BAUCODRAFT_78782
03015 mRNA surveillance pathway
BAUCODRAFT_78782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcom03019
]
BAUCODRAFT_78782
Messenger RNA biogenesis [BR:
bcom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
BAUCODRAFT_78782
mRNA cycle factors
P-body specific factors
BAUCODRAFT_78782
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
19117209
NCBI-ProteinID:
XP_007681001
JGI:
Bauco1_78782
UniProt:
M2LD10
LinkDB
All DBs
Position
Unknown
AA seq
482 aa
AA seq
DB search
MPPKTSTKTNDRPGVLPVNAAVRAASTKTPAARLKLEIRRLPPGLTLSEFEETLGDDWKL
SNGKVDWREYRQGKIKAPGKVPEQSRCYLHVVNDTLVREFEQRFLQVLFQDKAGTHRNPD
LKFLPPTLGFAPNQRTPLQSKSRADNRQGTIDQDPEFIAFLEAETQPLTKPGALDIVGAE
KERVEVKTTPLIEDLREKKANKAKAAADKADKKKAEEKKGPPGSDTKDVAAEKDGTVMQQ
KVQQAAKDAAKVLNKQAFAKQQSSVDTTQPTTAKAAASARLKKPAQSPRQQNATPRPRAT
AEGIKKMLQKDLGIKPKPTPAAPASSVQPASLPSTTPTAPSAQGPTPPIPTAPAASRPLP
SSLPHPATTKAYLKHANPSQGMTEMLILRALSEYGEVTNVTIDPRKGTAIAVFSTNEGLQ
KAMQARRVPVANGAVEVLEFKDAGFRSGAGPAPRGRGGYRGGRGGAPAGRMGGMPTPPPP
VT
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgccgcccaagaccagtacgaagacgaatgatcgcccaggtgtgctgcccgtcaatgcc
gctgttagagctgcttccaccaagactccggctgcgcgcttaaagctcgagatccgccgt
ctcccaccaggactgaccttgagcgagttcgaggagacactgggtgacgactggaagctt
agcaatggcaaggttgactggcgcgaataccgtcaaggcaagatcaaagctccgggcaag
gtacctgagcagagtagatgctaccttcacgtcgtgaacgatacacttgttagggagttc
gaacagcgcttcctgcaagttttgtttcaggacaaggctggtacgcatcgcaatccggat
ctgaagttccttccgcctacgctgggctttgcgccgaaccagagaacgccgctgcagtct
aagagccgagcggacaataggcaaggcacgatcgatcaagatccggagttcattgctttc
ctggaggcggagacgcaacctctaactaagccaggagctctggatatagtcggtgcagag
aaggagagagtggaggtcaagactacgccgctgattgaggacttgcgggagaagaaggcc
aacaaagccaaagccgcggcagacaaggcggacaagaagaaggctgaagagaaaaagggc
ccacccggcagtgacacgaaggacgttgcggcggagaaggatgggaccgtcatgcaacag
aaagtgcagcaggctgcaaaagacgcggctaaggtattaaataagcaggcctttgccaag
cagcagagttccgtcgatactacgcagccgacaacagcaaaagctgctgcgagtgcacgg
ctaaaaaaaccggcgcagtctcccaggcagcagaatgctacgcctaggccgcgcgcaact
gctgaaggcatcaaaaagatgctacagaaagatctcggcatcaagccaaaaccaacacca
gccgcaccagcaagtagcgtgcagccagcgtcgctaccatcaaccacacccactgctccg
tcagcgcagggacctacaccacctatccccacagcacccgcggcgtccagaccgttacct
tccagcttacctcatcccgcaacaacaaaagcctatctcaagcacgccaaccccagccaa
ggcatgacagaaatgctgatcctgcgcgccctgtccgagtacggagaggtcaccaacgtt
acgattgatcctcgcaaaggcactgcgatagctgtcttcagcaccaacgaaggcttgcag
aaagccatgcaagccaggcgtgtgccggtggcgaacggtgcggtggaggtgctggagttc
aaggacgcaggtttcaggagtggtgcaggaccggcgcctagagggagaggtgggtaccga
ggtgggcggggaggtgctcctgctggacgaatgggtggcatgccgacgccgccacccccg
gtaacatga
DBGET
integrated database retrieval system