Bradysia coprophila: 119067399
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Entry
119067399 CDS
T08269
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bcoo
Bradysia coprophila
Pathway
bcoo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
119067399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcoo03400
]
119067399
Enzymes [BR:
bcoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119067399
DNA repair and recombination proteins [BR:
bcoo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
119067399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
RNA_ligase
DNA_ligase_IV
BRCT_2
mRNA_cap_enzyme
PTCB-BRCT
Rep3_N
Motif
Other DBs
NCBI-GeneID:
119067399
NCBI-ProteinID:
XP_037026239
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Position
X
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AA seq
913 aa
AA seq
DB search
MDELSKANISANILFSTVTSTLERIQNTAGHAKKVAILSGYFEKFAKFRDTFAKSNVDCN
SSIYPVLRLIIPKKDVDRDRYGIQTYTFGQIYVRILGVQPKSDVAKRLTAKCSSKDYPNV
VYDVMKNRCCDVCTLTVYDVNKHLDTIADCYNNNNRKKIDDEIIKMVQRMTAIDQKWLVR
IILKDMNLGVKPGTILTTFNPSAKEFLNQYSSLSRVCLAVENGEVYEESASVVELFRRCN
PMLCQRGTVEKLQSLLSHKEYYLETKMDGERFHMHIKDGEYKYFSRGGHEFNSFGSNKTS
GSLTPFVDPLFKVSVKNLILDGEMMVYNKEHLVYHTKGEHFDVKAIQPNDSTRRPCFVAY
DILYFNDQSLINKPYAERSRLLASIFNEKPGVLTMCKPIKIRDSDHIIECLNKAFDQKEE
GVVIKESDSVYAPGKRVSSWIKIKPDYIDGLVSDFDLLVIGGYYNPSNKFIYKYLLGVQK
KLSSSKSEFVAVCNISSGLSTSKRIEINEKLKPYWKNCAHTKSGRSTVVNNPPGMDFGSQ
TPDVWIQPEHSIIFEVRASELVSSTSYGTPYTLRFPRIESLRTDKSWYDCCQLEEYESVC
LSNNKVEKAVKRHITDTDINAMPPKRTRQSTNDKKTKFSAPSNVGNINLLYDNVPKVDRI
CEGKEFCVLNTANNLPPLEELHKMILRHGGKVVQNPTKQTFVAIAATESLRVSKLKEARM
CNIATVNWLMKAVGVNIPLKKLIRFHPSDMLSYTDETADEFRRKYDKYSDSFTKQVSVGQ
LKSVFDSMDEKDLDVLDRNGIYQLEAELEGDQSKPVNMFRLATGLFWNPGKCNKRMDLAE
EFFKFRGGKVKDSFDNLSHIFVDPDGFNVEQLLAEHNASRRGIEKIRFVSYEWVMQCFNL
GKKCSAKSFLLAI
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggatgaattatcaaaggccaacatatcggcaaatatcctattcagtaccgtcactagt
accctggaacggattcaaaatacagcaggacacgcaaagaaagtagcgattttgtctgga
tattttgaaaaattcgccaaatttcgcgacacatttgccaagtccaacgttgattgtaat
tcgagcatctatcccgtgctccgtttaataattccgaaaaaagacgtggacagagacaga
tacggcatccaaacgtacacattcggacaaatttatgttcgcattttgggtgttcaaccg
aaaagtgacgttgctaagcgcttaacagcaaaatgttcgagcaaggattacccgaatgtg
gtgtacgatgtaatgaaaaatcgttgctgtgatgtgtgcacattgacggtctacgatgtg
aacaagcatttggatacgattgccgattgctacaacaataacaatcgcaagaaaatcgat
gacgaaatcatcaaaatggtccaacgaatgactgccatcgaccaaaagtggctggttcgc
ataattctcaaggacatgaatcttggcgtcaagccaggtacaatactgacgacattcaac
ccatcggcaaaggagttcctaaatcagtacagtagcctgtcacgtgtttgcctggccgtc
gaaaatggtgaggtatacgaggaaagtgcatccgttgtggaattgtttcgacgttgcaat
ccgatgctctgccaacgcggtactgtcgaaaagcttcagagtttgttgagccacaaggaa
tattatctcgaaacgaaaatggacggtgaacggtttcacatgcacatcaaagacggagag
tataagtacttttcgcgtggcggtcacgagttcaattcatttggatctaataaaaccagc
ggctcattgactccgttcgttgatcctttgtttaaagtctcggtgaaaaacctcattttg
gacggcgaaatgatggtctacaacaaggagcaccttgtctaccacacaaagggcgaacat
ttcgacgtaaaagcgattcagccgaacgattctacgcgtagaccatgcttcgtcgcctac
gacattctgtacttcaacgaccagtctttgattaacaaaccgtatgcggagagatcgcga
ttgctagcttcaattttcaatgaaaagccgggcgttctcactatgtgcaaacccatcaaa
atcagagacagcgatcacataatcgagtgcctaaacaaagccttcgatcagaaggaggaa
ggtgttgtgatcaaggaaagtgactccgtatacgcaccggggaaacgtgtttccagttgg
attaaaattaagccagactacatcgatgggttggtgtctgatttcgacttgctagtcatc
ggtgggtactacaatccgtcgaacaagtttatctacaaatatttgctgggagtgcaaaag
aagctttcttcatctaaaagcgaattcgtggccgtttgtaacataagttcaggcctgagc
acttcaaagcgcatcgaaatcaacgaaaaattgaaaccatactggaagaactgtgcgcac
acaaaatccggccgatcgacggtggtcaacaatccgcccggcatggatttcggatcgcag
acaccggatgtctggatacaaccggaacattccattatattcgaggtgagagcctctgaa
ctggttagcagtacttcatacggtacaccttacacgttaagatttccgagaatcgaatca
ttgcgaacggataaatcgtggtacgattgctgtcagttggaggaatacgaaagtgtttgc
ttgtcaaacaacaaagtggaaaaagcggttaagcggcacattaccgacaccgacataaat
gcaatgccaccgaagcgaacaagacaatcgacgaacgataagaaaacgaaattttcagcc
ccatcaaacgttggcaacattaatctcctttacgacaatgtgccgaaagtggatcgcatt
tgtgaaggcaaagagttttgtgtgttgaacacggccaacaatctgcccccattggaagaa
ctccataaaatgattttgaggcatggtgggaaagttgtacagaatcccacaaagcagaca
tttgttgccatcgctgctactgagtcgcttcgtgtgtcgaagttgaaagaagcgagaatg
tgcaacattgccactgttaactggttgatgaaggcggtcggtgtaaatataccattaaag
aagctgatacgattccatcccagtgacatgttgagctacaccgacgagacggcagatgaa
tttagacgaaagtatgacaagtattccgattcattcaccaaacaggtgtcggttggccag
ttgaaatcagtttttgattcaatggatgagaaggatcttgacgtgttagatcgaaacgga
atttatcaactggaagcagaactggagggtgaccaatcgaaaccggttaatatgtttaga
ctggcaaccggtctgttctggaacccgggaaaatgtaacaaacgaatggatttggctgaa
gagtttttcaaatttcgaggtggcaaagtaaaggattcgtttgacaatctgagtcacata
ttcgtggatccggacgggtttaatgtcgaacagttactcgccgaacacaatgctagtaga
agaggaatcgaaaaaatccgatttgtgagctatgaatgggtgatgcaatgctttaatcta
ggtaagaaatgtagcgccaaatcgtttctacttgcaatatga
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