Bradysia coprophila: 119077964
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Entry
119077964 CDS
T08269
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bcoo
Bradysia coprophila
Pathway
bcoo03013
Nucleocytoplasmic transport
bcoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119077964
03015 mRNA surveillance pathway
119077964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcoo03019
]
119077964
Enzymes [BR:
bcoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119077964
5.6.2.5 RNA 5'-3' helicase
119077964
Messenger RNA biogenesis [BR:
bcoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119077964
mRNA cycle factors
Common to processing body (P body) and stress granule
119077964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
Helicase_RecD
UvrD-helicase
DEAD
AAA_22
ATPase
nSTAND3
SRP54
AAA_16
AAA_10
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
119077964
NCBI-ProteinID:
XP_037041239
LinkDB
All DBs
Position
Unknown
AA seq
1109 aa
AA seq
DB search
MTEYGDGGSQLTFLDTDDLILGADTQATDFDFRDFTIPSQSQTQASQSDLTGSSQINGIT
KGRKVLPINSMAELQFEEEDDDTVLPTQELPPHACKYCGIHEPSTVVMCNICKTKYNKER
WFCNGQGSTSGSHIINHLVRAKHREVTLHSDGPLGETILECYSCGVRNVFVLGFIPAKAD
SVVVLLCRQPCAAQNSLKDMNWDQEQWKPLISDRSLLSWLVKIPTEQEQLRARQVSAVQI
NKLEELWKENENATFQDLEKPGVDSEPSQVLLRYEDGFQYQKVFGPLVRLEADYDKRLKE
SQTQENIEVRWDVGLNKKTIAYFTLAKTDGDMKLMHGDELRLRYVGELHKPWSDNGHVIK
VPDNFGEDVGLELKNSQSAPIECTSNFVIDFIWKGTSFDRMQLALNKFAVDDNSVSNYIY
SRLLGHGRHDGSDELTFRCASLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTG
KTVTSATIVYQLVQQNGGPVLVCAPSNTAVDQLTEKIHQTDLKVVRVCAKSREAIDSPVS
FLALHNQIKNMTSNTELNKLQQLKDETGELSSADEKRYRMLKKSAERELLEAADVICCTC
VGAGDPRLARIKFNSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAK
AGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCADERRLKIDFP
WPEADRPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLKCGVEPSQIGIITPYEG
QRAYLVQYMQYQGSLHSKLYQGIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRR
LNVALTRAKYGIIIVGNPKVLAKQPLWNHLLNFYKERKVLVEGSLNNLKESMIQFVKPKK
IVNTLNPGTHFMSNAMYDAKEAMAVGSFYDKSGSMGYNPHGGHGNAHMHHQPPMQMPYNR
NPQLDMFARTHDSISYISPERAQATMNNMPVPVGMFMNMGNIPPRFYNQHQQAVQASKQS
RRKPMPINKTSRTHGGGSQNHPLTQGMSQNMSQPGFSLSQHGDLSQDFMAEYQSQMDGIL
SQDSSFQQSQGMDRFTAGMQQSNQFSQPY
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgacggaatacggtgatgggggttcacaactgacattcttggacacagacgatttgata
ttgggtgccgatacacaggctacggatttcgatttccgtgactttacgatacccagccaa
agtcaaacgcaggcatcacagtccgatttgactggatctagtcagatcaatggcattacc
aaaggacgtaaggtgttgccgatcaacagcatggccgaattgcaattcgaagaggaagac
gacgatacggttttgccgacacaagaattgccaccgcacgcatgtaaatactgcgggatt
catgaaccatcgacggttgttatgtgcaacatttgcaaaacgaaatacaacaaagagaga
tggttttgcaatggtcaagggagcacatcgggtagccacataatcaatcatttggtgcgg
gcaaaacatcgtgaagtgacgttgcacagcgatggaccgttgggcgaaacaatattggaa
tgttattcgtgtggcgtgcggaatgttttcgttttaggatttataccagccaaagcagac
tctgtggtcgttttgctgtgcagacaaccgtgtgctgctcaaaattcactcaaggacatg
aattgggatcaagagcaatggaagccgttaatctccgatcgatcgctgctatcgtggcta
gtgaaaataccgaccgaacaggaacagttgcgggctagacaggtgtcggccgtgcaaatc
aataaactcgaggagttgtggaaagagaatgaaaatgcgacgtttcaagatttggaaaaa
ccgggcgtcgatagcgagccatcacaggtactgctacgctacgaggacggatttcaatat
cagaaagtgttcggaccgttggtacggttggaggcagactacgataaacgtttgaaggaa
tcacaaacacaagaaaatatcgaggttcgatgggatgtcggtctgaataagaagacgatt
gcgtatttcaccttggcaaaaactgacggcgacatgaaactgatgcacggcgatgaattg
cgactgcgatatgtcggtgaattgcacaaaccctggtcggataacggtcatgtgatcaag
gtgccggataatttcggcgaagacgtcgggttggaattgaagaacagtcaatcggcgccc
atcgaatgcacatcgaactttgtgatcgacttcatttggaagggaacctcatttgaccgg
atgcagttggctttgaataaattcgccgtcgacgataattcggtgtcgaattacatttac
tcgcgtttgctcggccacggtcgacatgacggatccgatgagttaacgttccgttgtgct
agtttaccgaaacatttcagtgcaccgaatctgccagatttgaatcgttcgcaggtgtat
gcggttaagcatgccatccagaggccactcagcttaatccagggacctccaggtactggt
aaaaccgtcacttctgccacgatcgtctatcaacttgttcagcaaaatggtggaccggtt
ctagtgtgtgctccgagtaacacggccgtagatcagttaaccgagaaaatccatcaaact
gacttgaaagtcgtccgagtgtgtgctaagtcacgtgaggcaatcgactcaccggtcagt
tttctggcgttgcacaatcaaatcaagaacatgaccagcaacacggaattgaataaactg
cagcagctcaaagacgaaactggtgaattaagctcggccgatgagaaacggtaccgtatg
ctgaaaaagtcagccgaacgggaattgctcgaagcggctgatgttatatgttgcacttgc
gtcggtgctggtgatcctcgattggctcgcatcaaattcaacagtatcctgatcgacgag
agtatgcaatcgacggaacccgagtgtatggtgccggtggttcttggtgccaagcaattg
atcttggtcggtgatcactgtcaactcggtccagttgtgatgtgcaaaaaggcagccaag
gccggcctgtcgcaaagtttgttcgaacgattagtagtgttgggtatacgaccgttccga
ttggaagtgcagtaccggatgcatcccgaattgtcccaatttccgtccaactttttctac
gaaggaagtctgcagaatggtgtttgtgcggacgaacgtcggttgaagattgacttccca
tggccggaagctgatcgtccgatgtttttcctagtcactcaaggtcaagaagaaatcgct
ggcagcggcacatcctacctgaatcgtacggaagcgtcaaatgtggagaaaattacgact
cgttttttgaagtgtggtgttgaaccgtcacagatcggcatcataacgccttacgaagga
cagagagcatatttggtgcagtacatgcagtaccagggcagtcttcattctaaactgtat
caaggcatcgaaatcgccagtgttgatgcgtttcaaggacgcgaaaaggacatcatcatc
atgtcttgcgttcggtcgaacgaacaccagggaattggtttcttaaatgacccgcgtcgt
ttgaatgtagctctgaccagagccaagtacggcatcatcattgtgggcaatccgaaagtg
ttggcgaaacagccactgtggaaccacctgttgaacttctacaaagagcgcaaagtgctc
gtcgaaggatcgctgaacaatttgaaggagtcaatgattcaatttgtcaaaccaaagaaa
atcgtcaacacattgaacccggggactcatttcatgtccaacgcgatgtacgatgccaaa
gaggcgatggccgttggttcgttttacgacaaatccggttcgatgggctacaatccgcat
ggtggtcacggcaatgctcatatgcaccatcagccaccgatgcagatgccatacaatcgc
aatccacaactggatatgtttgctcgcacccacgattcgatcagttacatatcgccggaa
cgcgcacaggcgacaatgaacaatatgcccgttccggtcggaatgttcatgaatatgggc
aacattccgccacgattttacaatcaacatcaacaggccgttcaggcatcgaaacagagc
cgtcgcaaaccgatgccgatcaacaaaacgtcacgtacgcatggcggtggtagtcaaaat
catccgttgacacaaggaatgtcacagaatatgagccagccgggtttcagtttgtcgcag
catggtgatttgtcgcaagattttatggccgaatatcagtcgcaaatggatggcattctg
tcgcaggattctagctttcagcagagtcaaggcatggatcgcttcaccgctggtatgcaa
caatcaaatcaattctcccaaccatactga
DBGET
integrated database retrieval system
