Bradysia coprophila: 119078280
Help
Entry
119078280 CDS
T08269
Name
(RefSeq) uncharacterized protein LOC119078280
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bcoo
Bradysia coprophila
Pathway
bcoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119078280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcoo03021
]
119078280
03019 Messenger RNA biogenesis [BR:
bcoo03019
]
119078280
Transcription machinery [BR:
bcoo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119078280
Messenger RNA biogenesis [BR:
bcoo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119078280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_C
Pcf11_helical
Pfc11_Clp1_ID
CTK3
zf_UBZ
DNA_ligase_A_N
Motif
Other DBs
NCBI-GeneID:
119078280
NCBI-ProteinID:
XP_037041664
LinkDB
All DBs
Position
Unknown
AA seq
1676 aa
AA seq
DB search
MTDTSEIEKEYLSSLSDLNVNSKPLISMLTMLAEENIEHGQVIVDVIVNHITKIHPDVKL
PVLYLIDSIVKNLGNRYDNRYITLFSHSIVKVFCDVFKVVNEKVREKMFALRQTWNDIFP
LAKLYALDIKTNEIDVGWPITAKLTPSIHVNPNFFKGKTPDSDIIRDKQRELLELQKRKL
ELELAATKKHIAEQEKQLKANAAVVQTVSTTVPQPENLSQPLLAESSGNNFTNSQYQSID
MIQPNTSDSMAQKARMEIHKPESAPQNVRSRDPRLARQMQFQNSAQRNFNQRNRTASPAF
VNQGFGPASTHFVANSQADNAISHRPPTAFTAASMNDSGRKSRTASKNRSSSKEVKVRSA
SKTSPKPQKPNSQKSSPKSPSSSSSKSSLKSSKTFPSSNRQSPKDQKKDRYKDKESCKLS
PTQSAAITALAEAERKIKEFTIPKKRSPSPKDKSTKSITDPKVSSTTKTADSPTKFKASK
TSSKSRNYVRHNRGGGASADIVQPETAPSTTSVTAPIIPTTTTSESIESSLIPPSIEPVV
KVPASASCVPLTGAGENQSFKNNVIDVPSKDIDLRLMLSNAGSSPISTTSFGSSLSATPS
SVEARKRSEDRSVEEPPEQKKRKTEKIDGLFGKEDVDLRTQLSQAITPLFPPAVLPSGEE
KPDWATIKADTPKSIKSNFDAVRAKLAEASRHLPNKPNRNNDIDLRRRHMRDFIEDSQDG
SDATLKIILAQAQAQLDNDDMNLEQYNALMQQVVQAHTKSKKESLKRKNDLVSRSGLSMD
NNDHFSSSSSDSNIAKSSRHAKRDHRDSDGPDRDNVSSKENRSNRNHKRSRTSKWSSGPP
SRDKSQNAMLNFQQQPSSSRQFNVQNVWQDEQPPMFPTNMGIGPTIMMNNPYMINAIPSN
LPGINNQRTINIDGIPREIRFYDEVAIAFMKENGGEPKEIGFQSGERRVLVDNKDSIVLA
FNDSYKPFKIDGVKYQIRFGSPIRELYINNMWYECFFGDPPTNITLDGRIRQFKIEGPSP
QVRIGNLRTDLVVGKIDLYVDVHVKVSLYLDAQVQHFELDNQKHTVQFADYFLTVLIDGE
QFGVEYGGMPKKIRFGGRDHYIRFSIMPDGVVPGMMYIKNMLRTERHRGIQSPLPTVYTE
LIMPLIPPVPEMAAVAPVLPAGSVIEVPSTSMLPAAPSINIDDLFQKLLASGILNNTTKA
ETKEKAKEKPKTISLAKPDTLKLRQQTHIHVLFSGMQCSSCGVRFPPEQTIKYSQHLDWH
FRQNRRDRDSTRRAHSRRWYYNVEDWIQYEEIEDLDERERNWFETQQMEMDMANDDSAQR
NESPVPSCVAGPEDVDKTCDMCHDQFETFYNEENEEWHLRNAIRVDDRTYHPICFEDCKT
SETLDESSINNGLHGDNAVELALKTETADESVDRILLDDDDDVIVLPQEEPVITEIADDD
DTPTVSSSVVTVEKIDSTSQDGASTSGAVTSSTNDDVNATYESIGNESDLQILVPQISVV
DVEDFEEKPIDSTTQLPVKIKEEPKDDGYDEDDAFEDIGTFEEATIIEDNSVDGYTPVAI
VSTTPAPSTHQTQASMITSLDGNVQLQDAAPATIGMNKIKINITKNVTKTAIKASDSNLG
KQSELAATKANVTDKNKEEEEQEITFEYKDTMKGANFKKLPAVRSGTETSGLCTIM
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgacggatacatcggagatcgaaaaggagtatctctccagtttgagtgatctcaatgtg
aacagtaagccgctgataagtatgcttacaatgttggccgaggagaatatcgaacacggc
caggtcatcgtcgatgtcatcgtaaaccatataactaagatacatcctgatgtgaagctc
cccgtactatatttgatcgattcaatcgtcaaaaatcttggtaatcgatacgacaatcga
tacatcaccctgttcagccattcaatagtgaaggttttttgcgatgtctttaaagtggtg
aacgaaaaagtacgagagaagatgttcgcgctacggcagacgtggaacgatatatttcca
ctagctaaattatacgcattggacatcaaaaccaatgaaattgatgtgggatggccgata
acagccaaattaacaccatccattcacgtgaatccgaattttttcaaaggcaaaacaccc
gacagcgacattatacgggacaagcaacgcgaacttttggaattgcagaaacggaaatta
gaattggaattggctgcaacgaagaagcacattgccgaacaagagaagcagctaaaagcc
aatgctgccgtcgtgcaaacggtgagcacaactgttccacagccggagaacctttctcaa
ccattgttggcagaatcgtccggcaataacttcacaaactcgcaatatcagtctatcgat
atgatacaaccgaatacaagcgattccatggcacaaaaggcacgcatggaaatccacaaa
ccggagtcagctccgcaaaatgtacgctctcgtgatccccgactcgcccgtcaaatgcaa
tttcaaaattctgctcaacgtaacttcaatcaaagaaatcgaacggcttcaccagcattt
gttaatcaaggttttgggcccgcttcaactcatttcgtcgcaaatagtcaagcagacaat
gcaatttcacaccgacctcctacagcatttactgctgccagtatgaacgattcaggtaga
aaatcgcgaacagcaagcaaaaaccgaagttcgtcgaaagaagtgaaagttcgctcggca
tcaaaaacgtcaccgaaaccacaaaaaccaaatagtcaaaagtcatctcccaaatcacca
agctcgtcttcatccaaatcatcgttgaaaagctcgaaaacgtttccgtcgagcaaccgc
cagtcaccgaaagaccagaaaaaagatcggtacaaagacaaagagtcctgtaaactgtca
ccgactcaaagtgcggcaatcacagctttggctgaagccgaacggaagatcaaagaattt
acgataccgaaaaagcgcagcccatcgccgaaagataagtcgaccaagtcgataacggat
ccgaaagtgtcgagcaccacaaagaccgccgacagtccaaccaagttcaaggccagtaaa
accagttcgaaatcaagaaactatgtgagacacaatcgaggaggaggtgcaagtgcagac
attgtccaaccggagacagcaccatcaacaacatcggtgactgccccgatcatcccaacc
accaccacatcagaatcgattgaatcatcactaattccaccgtccattgaaccagtagta
aaagttccggcaagtgctagctgcgttccgttaacaggagctggcgaaaatcaaagcttt
aaaaacaatgtgattgacgttccatcgaaagacatcgatctaagattaatgctatccaat
gcgggatcatcgccgatatcaaccacttcgtttggatcatccctttccgcaactccgtcc
tcggtcgaagcacggaaaaggtccgaagatcgcagcgttgaagagccgcccgagcaaaag
aaacgaaagactgagaagatcgacggattattcggaaaggaagacgtggatttgagaacg
cagcttagtcaagcaataactccgttatttccgcctgcagttctcccgtccggtgaagag
aaacctgattgggcaaccatcaaggctgacacaccaaaatcgatcaaatcgaatttcgac
gcggttcgagctaaattggctgaagctagtcgacacctgccaaacaaacccaatcgaaac
aacgatatcgatctaaggcgacgacacatgcgcgatttcatcgaagattcgcaggatggc
agcgatgcaacgttaaaaatcatattggctcaggcacaggcgcaactcgacaacgacgac
atgaatttggaacaatacaacgctttgatgcaacaggtcgttcaggcgcacacaaagtca
aagaaagagtcgttgaagcgtaagaatgatttggtcagccgatccggtttgtcaatggac
aacaacgatcatttcagttcgagcagttccgactcaaatattgccaaatcatcacgtcat
gccaaaagagatcaccgtgatagtgatggaccagatcgtgacaatgtgtcgtcaaaggaa
aatcgaagcaatcgaaaccataagagaagtcgaacctcgaagtggtcgtcaggtccacca
tcacgggacaagagtcaaaatgcgatgctcaattttcaacaacaacccagttcgtcgcgt
caattcaatgtccaaaatgtatggcaagacgaacagccgccaatgttcccaacgaatatg
ggaataggaccaactataatgatgaataatccgtatatgatcaatgccatcccatcgaat
ttacccggcattaacaatcaacggaccatcaacattgacggcattccacgcgagattcgt
ttctacgatgaagtggccattgcatttatgaaagagaacggtggcgaaccaaaggaaatt
ggttttcaatccggagaacgtcgggttctcgtcgacaacaaggacagcatagtgttggcc
ttcaacgattcctataagccatttaaaattgacggtgtcaagtaccagattcgatttggt
tcaccgatcagggaactgtacattaacaacatgtggtacgaatgtttcttcggtgatcca
cccaccaacatcacactggacggcagaattcgtcaatttaaaatcgaaggaccatcgcca
caagtgcgaatcggaaatttgcgcactgatctggtggttgggaagatagatttgtacgtc
gacgttcatgtgaaagtttcgctctatttggatgcgcaggtgcagcactttgaattggac
aatcagaagcacaccgttcagtttgctgactatttccttaccgtattgatagacggtgaa
cagttcggcgtcgaatatggtggtatgccaaagaaaattaggtttggcggacgtgatcat
tacatccgattctccataatgccagatggcgttgtcccggggatgatgtacataaaaaat
atgctgcgaaccgaacgtcatcgtgggatccagtcgcctctaccgacagtgtacactgaa
ttaataatgccactcattccgcctgtgccagaaatggcagctgtggctccagtattacca
gctggttcagttattgaagtgccttcaacgtcaatgcttccagctgccccatcgataaac
atcgatgatttgttccagaaattgttggcgtccggcatcttaaacaacacaaccaaagcg
gaaacaaaggaaaaggcaaaggagaaaccgaaaacaatatcgttagccaagcccgatacc
ctgaagttgcgtcaacagactcacattcatgtcctgttttctggcatgcaatgtagcagc
tgtggagttcgttttccacccgaacagaccattaagtatagtcaacatttagactggcat
ttccggcagaatcgtcgcgatcgtgattcgactcgacgggcgcactctcgtcggtggtat
tacaatgtggaagattggattcaatacgaagaaatcgaagacctagacgaacgggaacgc
aattggttcgaaacgcaacaaatggaaatggatatggcaaacgatgattcggcccagcgc
aatgaatcaccggtgccgagctgtgttgcaggaccagaagatgtagataaaacatgtgat
atgtgccacgatcaattcgaaacattctacaacgaggaaaatgaggaatggcaccttagg
aatgctatccgtgtcgatgacagaacgtatcatccgatttgttttgaagactgtaagact
tcagagacattggacgagtctagtattaacaatggtcttcacggcgacaatgctgtggag
ctggccttgaaaaccgaaacagccgatgagtcagttgatcgaattttgcttgacgatgac
gacgatgtcattgtgttaccgcaagaggagcctgtcatcaccgaaattgcggacgatgat
gatacacccacagtttcgtccagcgtagtgactgtggagaaaattgattcaacgtcccaa
gatggtgctagcacatccggtgcggtaacatcatcaaccaatgatgacgtgaacgctacg
tatgaatcgattggaaacgaatcggatcttcagatattggtgccacaaatttcggttgtt
gatgtcgaagatttcgaggagaaaccgatcgattcaacgacacaattgccggttaagatt
aaggaagaacccaaagatgatggctacgacgaagatgatgcgttcgaagatattggaacg
tttgaggaggctacgatcatcgaagataacagtgtggatggctatacacctgtggctatc
gtatcaacaacgcccgcaccgtcaacgcatcagacgcaagcgtcgatgatcaccagtctg
gacggtaatgttcaattgcaggacgcagcaccggcaacaatcggaatgaataagattaag
ataaacataacgaaaaatgtaacgaaaactgcaataaaggctagtgatagtaatttaggt
aaacagagcgaattagccgcgacgaaagctaatgtaaccgacaagaataaagaggaagaa
gaacaagaaattacatttgaatacaaggacacgatgaaaggggcgaattttaagaaattg
ccagccgttcgaagtggcaccgaaacatctggtttgtgcaccataatgtaa
DBGET
integrated database retrieval system
