Bradysia coprophila: 119083233
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Entry
119083233 CDS
T08269
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
bcoo
Bradysia coprophila
Pathway
bcoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119083233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bcoo03041
]
119083233
Enzymes [BR:
bcoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119083233
Spliceosome [BR:
bcoo03041
]
Complex C
Other components
Step II factors
119083233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
Flavi_DEAD
ATPase
AAA_14
cobW
AAA_7
AAA_16
PhoH
ABC_tran
Sigma54_activat
SRP54
Motif
Other DBs
NCBI-GeneID:
119083233
NCBI-ProteinID:
XP_037048790
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All DBs
Position
X:2749417..2768924
Genome browser
AA seq
1197 aa
AA seq
DB search
MEVLEGSESTTGGLVTKKDAKAPTFKVPKPSLFGLDRLAAQKRKEREDSKRLISFKDTEY
DDEGAPVTPKGESQFKTPDLSSSHKLNRQYRELKEETPTHSGGVSDKARNRLIEHQSKDK
RGVYVSTKERKRRSDDDDRDRRHKDRYRDRDRHRGYDRDSKRSDRRHRGDRDSQRSFHTP
KFKDEPRTPKFHLKDTTSSTSWDDDDEKYPMKRSAWDFPTPKDPSADRSEWSVRSNRKIK
DKPEDDTPRTYTPAHKFNAWANDRKRSGATPQVGKEQDQPWGNEEERDMWEEEQRRLDRE
WYNIDEGYDDDNNPFTGGNAEYFKKREEQLEQKRKKRISAQQRQINKDNELWERNRMLTS
GVVMSINVNEDFDEEATERVHLLVHHIVPPFLDGRIVFTKQPEPVIPVKDPTSDMALIAR
KGSALVRVFREQKERRKAQKKHWELGGTKLGNIMGVEKTRDDEDEKFDAERDEADYKKGQ
KFAQHMIGDMEKGSDFSRKKTILEQRRFLPVFAVRQELLNVIRENSVVIIVGETGSGKTT
QLTQYLHEDGYSNFGMIGCTQPRRVAAMSVAKRVSDEMGTKLGEEIGYAIRFEDCTSDKT
VIKYMTDGILLRESLREPDLDNYSAIIMDEAHERSLSTDVLFGLLREIVARRHDLKLIVT
SATMDSTKFATFFGNVPTFTIPGRTFPVDTLFSKNSCEDYVDASVKQALQIHLQPTIGDI
LIFMPGQEDIEVTCEVLAERLGEIDNAPQLSILPIYSQLPSDLQAKIFQKSAEGLRKCVV
ATNIAETSLTVDGIIYVIDSGYCKLKVYNPRIGMDALQIYPISQANANQRSGRAGRTGPG
QAFRLYTERQYKDELLALTVPEIQRTNLANTVLLLKSLGVVDLLQFHFMDPPPQDNILNS
LYQLWILGALDHTGALTPLGRQMAEFPLDPPQCQMLIVSCKMECSAEVLIIVSMLSVPSI
FYRPKGREEEADGVREKFQVPESDHLTYLNVYLQWKQNSYSSNWCNEHFIHIKAMRKVRE
VRQQLKDILVQQKLSVISCGTDWDIVRKCICSAYFYQAARLKGIGEYVNLRTGMPCHLHP
TSALYGLGTTPDYVVYHELIMTAKEYMQCATSVDGYWLAELGPMFFSVKETGRSGKEKKK
QAAEHLQEMEEQMQQAQQQMEVDKIQAAQREEALIPKQEILTPGGATPRRTPSRIGL
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggaagttctcgagggatcagaatctacgaccggtggcttggttactaagaaagacgcc
aaagctcctacgtttaaggttccaaaaccgtctctcttcggattggacagactagcagct
caaaaacgtaaagaacgcgaagattcaaaacgattaatatcgttcaaagacactgaatac
gatgatgaaggtgctccagttactccgaaaggtgaatcacaatttaaaacaccagactta
agtagcagtcataagctcaaccgacagtacagagagttgaaagaagaaaccccaacgcat
agtggtggagtatccgataaggctcgaaaccgccttatcgaacatcaaagtaaagacaaa
cgtggagtgtatgtttcgacgaaagagagaaaacgtcgcagcgatgatgatgaccgtgac
cgcagacataaggaccgatatcgtgatagagataggcacagaggttatgaccgcgatagc
aaacgtagtgaccgaaggcatcgtggagatcgagactcgcagaggagttttcacacgcca
aaatttaaagatgaacccaggacaccgaaatttcacttgaaagacacaacatccagtaca
tcttgggatgacgatgacgaaaaataccccatgaagcgatctgcttgggatttccctact
ccgaaagatccgtcggctgaccgatcagaatggtccgttaggagcaataggaaaatcaag
gataaacctgaggacgatacacctcgtacatacacaccagcccataaatttaatgcgtgg
gcaaatgatcgtaaaagatccggagcaacacctcaagttggcaaagaacaggatcagccg
tggggaaacgaagaagagcgagacatgtgggaagaggaacaacgccgattggatcgtgag
tggtacaatatcgacgagggttatgatgacgacaacaatccgtttactgggggaaatgct
gaatatttcaagaagagagaggagcaactggaacaaaagcgtaagaagcgaatttctgcc
cagcagcgacaaatcaataaagacaatgagttgtgggaaaggaatcggatgttaacgtct
ggtgttgtcatgtcgatcaacgtaaacgaagattttgacgaagaggcaactgaacgagtc
catttattagttcatcacattgttccaccatttttggacggacgaattgtttttactaaa
caaccagagccggtgattccagttaaagatccaacatccgatatggcactaatagctaga
aaaggaagtgcactcgtacgagtatttcgagaacagaaggaacgaagaaaggcacaaaag
aagcattgggagcttggaggaacgaaacttggtaacatcatgggtgttgagaaaactcga
gacgatgaagatgaaaaattcgatgccgaacgtgatgaggctgactacaagaagggccaa
aagtttgctcagcacatgattggcgatatggaaaaaggttccgacttctcacgaaagaaa
actattctagagcagcgaagattcttgcctgtttttgccgtacggcaggaattgttgaat
gttatacgagaaaactcagtggtcattattgtaggtgagacaggaagcggcaaaactact
cagttaacgcaatacctgcatgaggacggttacagcaacttcggaatgattggatgtacg
caacccagaagagtagccgcaatgtctgtggcaaagcgagtatctgacgaaatgggaacg
aaattaggtgaagagatcggctatgcaattcgttttgaagattgtacatccgataaaacg
gttattaagtacatgaccgacggtatcttgcttagagagagtttacgtgaaccagattta
gacaattattcggcaattatcatggatgaggcgcacgaacgttcgctgtcgacggatgtt
ttgtttggattgttgagagagattgtagctcgccgtcatgatctgaaactcatcgtcact
tcagccaccatggactccacaaagttcgctacattcttcggcaatgttccaactttcacc
atacccggacgaacgtttcctgtcgatactctttttagcaaaaattcatgcgaagattat
gtagacgcgtccgtcaaacaagccctacaaatccatctgcaaccgacgatcggagatata
ttaatcttcatgcctggtcaggaagacattgaagtgacctgtgaagtgcttgcagaaaga
ctcggcgaaatcgataacgcacctcaactttccattttgcccatctactcgcagttacca
tctgatttgcaggcgaaaatttttcaaaaatctgctgaaggattacgaaaatgtgtcgtc
gctacaaacattgctgagacatcgttgacagtagatgggattatttatgtaatcgattct
ggttattgtaagcttaaagtttacaatcctcgtatcggtatggatgcgctgcaaatctat
ccaatatcacaagccaatgcaaatcaacgttcgggaagagctggacgaactggtccaggc
caagcatttcgcttgtatacggagcggcagtataaggacgaactattggcactgacggtt
ccagaaattcaaagaaccaatttggccaatacagttctgttactgaaatcgctaggcgtt
gtagatttactgcagttccattttatggatcctccaccacaggacaatatcctcaattca
ctgtatcaactgtggattctaggagctttggatcatacgggcgcgttgactccacttggc
agacagatggcggaatttccattagatcctccacagtgtcaaatgctcattgtttcgtgt
aaaatggaatgttctgctgaagtgctaattatcgtttcgatgttgtccgtgccatcaatt
ttttatcgaccgaaagggcgggaagaggaagccgatggtgttcgggagaagtttcaagta
cctgaatcggatcatttgacctacctcaacgtttatctgcaatggaagcagaacagttat
tcttccaattggtgcaacgagcatttcatccatatcaaagcaatgagaaaagtacgagaa
gttcgccagcaattaaaagatattttagtccaacagaaattatctgtcatatcatgcggc
actgattgggacattgttagaaagtgtatctgttcagcttatttctaccaagctgcacgt
ctgaagggcatcggtgaatacgtcaatttgcgaaccggaatgccatgtcatttacatccc
acttcagcgttgtacggactcggtaccacaccggactacgttgtctaccacgaacttatt
atgaccgctaaggaatacatgcagtgcgcaacatctgtagatggatactggctcgctgaa
ttgggtcccatgtttttctctgttaaagaaaccggccgcagtggaaaggagaagaagaag
caagctgctgaacatctacaagagatggaggaacagatgcagcaggctcaacaacaaatg
gaagtggacaaaatacaggcggctcaacgtgaggaagcacttattcctaagcaggagatt
ctgacacccggtggtgctacaccgaggcgaacgccgtcaagaatagggctttaa
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