Brevibacillus composti: JD108_09445
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Entry
JD108_09445 CDS
T07811
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcop
Brevibacillus composti
Pathway
bcop03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JD108_09445 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcop03400
]
JD108_09445 (ligD)
Enzymes [BR:
bcop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JD108_09445 (ligD)
DNA repair and recombination proteins [BR:
bcop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JD108_09445 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DUF3678
Motif
Other DBs
NCBI-ProteinID:
QQE76060
UniProt:
A0A7T5ENX4
LinkDB
All DBs
Position
complement(1816861..1817784)
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AA seq
307 aa
AA seq
DB search
MRGGPGLPTETCDLVVTIEGKELTITNPTKPLWPEANVTKMDYIRYLLEVATPFLAYTQN
RLLTVIRYPHGIHDKHFYQKNLPDYAPDWIATKQWENSLYPLCNDVATMVWMANQAALEW
HVSFHLASDERPTELVFDLDPSTPDFPPVIETALLLKELLDDLQLPAVPKTSGATGLQIY
IPIQPRYTFEQTRMVGQFMATYLAEKRPDLITLERLVKNRGTKLYIDYLQPWRGKTLTAP
YSTRARREATVSTPLLWEELPHIHPTDFTVHTVPARLKQRGDLFAPVHDQRRRASLDPIL
SFLQRKR
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgagagggggcccaggcttgccaaccgaaacttgtgaccttgtcgtgaccatcgaaggc
aaggaacttaccattaccaatccgacgaagccgctctggccggaggcaaacgtcaccaag
atggactacatccgctatttgctggaagtggcaacgccctttttagcctatacccaaaat
cggctgctcacggtcattcgctatccgcacggaatccacgacaaacatttttaccaaaaa
aaccttcccgactacgccccggactggatcgcgaccaagcagtgggaaaactccctctac
ccgctctgcaatgatgtggctacgatggtctggatggccaatcaagccgccctggaatgg
catgtctctttccacctggcttccgatgaaaggccgacggagctcgtctttgacttggat
ccatcgactcccgacttccccccggtgattgagaccgccttgctcttgaaagaactgctg
gacgatctgcagctgccggctgtcccgaaaacgtcaggggcgaccggcctgcagatctac
atcccgatccagccccgctatacatttgagcaaacacgcatggtcggtcagtttatggct
acctacctggccgagaagcgcccggacctgatcaccctggagcgcctggtaaaaaatcgg
gggaccaagctgtatatcgattacctccagccctggcgggggaaaacgctgaccgccccc
tactcgacgcgagcccggcgggaggcaaccgtctccactcccctgctctgggaggagctg
cctcatatacatccgacagacttcaccgtgcataccgtccccgcccgcttgaagcagcgc
ggcgatttattcgcccctgtgcatgatcagaggaggcgcgcctctctggacccgatcctc
tcttttttgcagcgaaaaagatag
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