Bradyrhizobium commune: IC761_08070
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Entry
IC761_08070 CDS
T09283
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcou
Bradyrhizobium commune
Pathway
bcou03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IC761_08070 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcou03400
]
IC761_08070 (ligD)
Enzymes [BR:
bcou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IC761_08070 (ligD)
DNA repair and recombination proteins [BR:
bcou03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IC761_08070 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QPF93213
UniProt:
A0A7S9D903
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All DBs
Position
1697646..1700318
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AA seq
890 aa
AA seq
DB search
MLRKLSTYRQKRDFERTPEPSGEAAVAPSKLRRFVIQKHDATRLHYDFRLEFDGVFKSWA
VTKGPSLNPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESDDPEAGFK
KGDLKFTLHGEKLHGSWVLVRMRNRGGEKRTNWLLIKHRDEYASEDEDILAEDKSVASGR
AMAQIADGKGRAPTPFMLAKGAKGKADAVWQSNRAEETKGRTVKPAPRTALKGGAAPKSR
TGKKATTSTTAKSVSEMPDFVAPQLCTPVERPPSGDRWCHEIKFDGYRVQLRVEGGNATL
KTRTGLDWTDKFAAIAKEANALPDVMIDGEIVALDHNGTPNFSSLQAALSDGKTEDLIFF
GFDLLFADGLDYRRLPLGARKARLKELLAARKRKSNQIRYVEHFESDADTVLQSALKLEL
EGVVSKKLDAPYRSGRTESWTKTKCRAGQEVVIGGWKTTAGKFRSLMAGVYRGDHLAYVG
IVGTGFGADKVKRIMPFLKEAASSENPFGGKNAPKKTRDVHWLKPELVAEIEFAGFTADG
NIRQAAFKGLRQDKPAEEVEAEMPADTRLAQPTARKRAPAKSGKAKDAGTAEVMGVAISK
PDKELWPDGGDGEGVTKLDLARYFEAIGDWMITHLKGRPCSILRAPDGIGGETFFQRHAM
QGGSKLLELAKVSGERKPYLEINRVEGLAAVAQIGGLELHPWNCAPGAYDTPGRLVFDLD
PAPDVAFADVVEAAKEMRQRLADVGMESFCKTTGGKGLHVVVPLLFGTRDKVSWKEAKAF
AQGVCQWMANDGPERYLLNMSKKLRNGKIFLDYLRNDRLSTAVAPLSPRARDGATVSMPV
TWAQVKGDLDPMRYTVRTVPGLLARSKAWDGYDDAAASIKAAMKTLAAKK
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcgaaaactctccacctatcgacagaagcgtgatttcgagaggacgccggagccc
tccggcgaggccgcagtggcgccgtcgaagctgcggcgtttcgtgatccagaagcacgac
gcgacccggctgcactacgatttccggcttgaattcgacggtgtgttcaagtcctgggcg
gtgacgaaggggccctcgctcaatccacacgacaagcggctggcagtcgaggtcgaggac
catccgctcgactatggcgatttcgaaggcacgattccggaaggccagtatggcggcggc
accgtgatgctgtgggaccgcggcacctgggaatccgacgatcccgaagccggcttcaag
aagggcgacctcaaattcaccctgcacggcgagaaactgcatggcagctgggtgctggtg
cgcatgcgtaatcgcggcggcgaaaagcgtaccaactggctgctgatcaagcatcgcgac
gaatacgccagcgaagacgaagatattctggccgaggacaagtcggtcgcctccggccgc
gcgatggcgcagatcgcggacggcaagggccgtgcaccaacgccgttcatgctggcgaag
ggcgccaagggcaaggcggatgcggtctggcaatcgaaccgcgcagaggagacgaaaggg
cggaccgtcaaacccgcgccgcgcacggcgttgaagggaggtgcggcgcccaagagcagg
actggtaaaaaggcgacgacgtccacgaccgccaagagcgtctcggagatgccggatttc
gtggcgccgcagctttgcacgccggtcgagcggccaccgtccggcgatcgctggtgccac
gaaatcaagttcgacggttaccgtgtgcagctccgggtcgagggaggcaacgcgacgctg
aagacgcggacggggctcgactggactgacaagttcgccgcgatcgcgaaggaggcaaat
gcgctgcccgacgtcatgatcgatggcgagatcgttgcgctggatcataacggtacgccg
aatttttcgtcgctccaggccgcgctgtcggacggcaagaccgaagacctgatcttcttc
ggcttcgacctcttgttcgccgatggcctcgattatcggcgactgccgctcggcgcgcgc
aaggcgcggctcaaggagttgctcgcggcgcgcaagcgaaagtcgaaccagatccgctac
gtcgagcatttcgagagtgatgccgacacggtgctgcaatcggcgctgaagctcgagctc
gagggcgtggtctcgaaaaagctcgacgcgccttatcgttcggggcggacggaaagctgg
accaagacaaaatgccgcgccggccaggaggtcgtgatcggtggctggaagacgacggcc
ggaaagttccgctcgctgatggccggggtctatcgcggcgatcatctcgcctatgtcggc
atcgtcggcaccggttttggagccgacaaggtcaagcgtatcatgccgttcctgaaagag
gcggcatcgagcgaaaatcccttcggcggcaagaacgcgccgaagaagacgcgcgacgtg
cactggctgaagccggagctggtcgccgagatcgaattcgccggcttcaccgccgacgga
aatatccgccaggccgcgttcaagggcctgcggcaggacaagccggctgaggaggtcgag
gctgaaatgcccgcagataccaggcttgcgcagccgaccgccagaaagcgcgccccggca
aaatccggaaaagcaaaggacgccggcaccgccgaggtgatgggcgtcgcgatctcaaaa
ccggacaaggagctgtggcccgacggcggcgacggcgagggcgtcacgaagctcgacctc
gcgcgctatttcgaggcgatcggtgactggatgatcacgcatctgaaggggcgtccctgc
tccatcctgcgcgcgcccgatggcatcggcggggagacattcttccagcgtcacgccatg
cagggtggctcgaagctgctcgagctcgcaaaggtctcgggcgagcgcaagccgtatctc
gagatcaaccgggtcgaggggctcgccgccgtcgcgcagatcggcggcctcgagctgcat
ccatggaattgcgcgcctggtgcctatgacacgccgggccggctggtgttcgatctcgat
cctgcgccggacgtcgctttcgccgatgttgtcgaggccgcgaaggagatgcggcagcgg
ctggccgacgtcggcatggagagcttttgcaagaccaccggcggcaagggcctgcatgtg
gtggtgccgctgctctttgggacgcgcgacaaggtcagctggaaggaggccaaggccttt
gcgcaaggagtctgccagtggatggcgaatgacggtcccgagcgctatctgctcaacatg
tccaagaagctgcgcaacgggaagatctttctggattatctgcgcaacgatcgcctgtcg
acggcggtggccccgctgtcgccccgcgcccgcgacggtgccacggtgtcgatgccggtg
acctgggcgcaggtgaagggtgatctcgatccgatgcggtatacggtgcggacggtgccg
gggctgctggcgcgatcgaaggcgtgggatggatacgatgatgcggctgcgtcgatcaaa
gctgcaatgaagacgctcgcggcgaagaagtag
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