KEGG   Bradyrhizobium commune: IC761_08070
Entry
IC761_08070       CDS       T09283                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bcou  Bradyrhizobium commune
Pathway
bcou03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bcou00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IC761_08070 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bcou03400]
    IC761_08070 (ligD)
Enzymes [BR:bcou01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IC761_08070 (ligD)
DNA repair and recombination proteins [BR:bcou03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IC761_08070 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QPF93213
UniProt: A0A7S9D903
LinkDB
Position
1697646..1700318
AA seq 890 aa
MLRKLSTYRQKRDFERTPEPSGEAAVAPSKLRRFVIQKHDATRLHYDFRLEFDGVFKSWA
VTKGPSLNPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESDDPEAGFK
KGDLKFTLHGEKLHGSWVLVRMRNRGGEKRTNWLLIKHRDEYASEDEDILAEDKSVASGR
AMAQIADGKGRAPTPFMLAKGAKGKADAVWQSNRAEETKGRTVKPAPRTALKGGAAPKSR
TGKKATTSTTAKSVSEMPDFVAPQLCTPVERPPSGDRWCHEIKFDGYRVQLRVEGGNATL
KTRTGLDWTDKFAAIAKEANALPDVMIDGEIVALDHNGTPNFSSLQAALSDGKTEDLIFF
GFDLLFADGLDYRRLPLGARKARLKELLAARKRKSNQIRYVEHFESDADTVLQSALKLEL
EGVVSKKLDAPYRSGRTESWTKTKCRAGQEVVIGGWKTTAGKFRSLMAGVYRGDHLAYVG
IVGTGFGADKVKRIMPFLKEAASSENPFGGKNAPKKTRDVHWLKPELVAEIEFAGFTADG
NIRQAAFKGLRQDKPAEEVEAEMPADTRLAQPTARKRAPAKSGKAKDAGTAEVMGVAISK
PDKELWPDGGDGEGVTKLDLARYFEAIGDWMITHLKGRPCSILRAPDGIGGETFFQRHAM
QGGSKLLELAKVSGERKPYLEINRVEGLAAVAQIGGLELHPWNCAPGAYDTPGRLVFDLD
PAPDVAFADVVEAAKEMRQRLADVGMESFCKTTGGKGLHVVVPLLFGTRDKVSWKEAKAF
AQGVCQWMANDGPERYLLNMSKKLRNGKIFLDYLRNDRLSTAVAPLSPRARDGATVSMPV
TWAQVKGDLDPMRYTVRTVPGLLARSKAWDGYDDAAASIKAAMKTLAAKK
NT seq 2673 nt   +upstreamnt  +downstreamnt
gtgctgcgaaaactctccacctatcgacagaagcgtgatttcgagaggacgccggagccc
tccggcgaggccgcagtggcgccgtcgaagctgcggcgtttcgtgatccagaagcacgac
gcgacccggctgcactacgatttccggcttgaattcgacggtgtgttcaagtcctgggcg
gtgacgaaggggccctcgctcaatccacacgacaagcggctggcagtcgaggtcgaggac
catccgctcgactatggcgatttcgaaggcacgattccggaaggccagtatggcggcggc
accgtgatgctgtgggaccgcggcacctgggaatccgacgatcccgaagccggcttcaag
aagggcgacctcaaattcaccctgcacggcgagaaactgcatggcagctgggtgctggtg
cgcatgcgtaatcgcggcggcgaaaagcgtaccaactggctgctgatcaagcatcgcgac
gaatacgccagcgaagacgaagatattctggccgaggacaagtcggtcgcctccggccgc
gcgatggcgcagatcgcggacggcaagggccgtgcaccaacgccgttcatgctggcgaag
ggcgccaagggcaaggcggatgcggtctggcaatcgaaccgcgcagaggagacgaaaggg
cggaccgtcaaacccgcgccgcgcacggcgttgaagggaggtgcggcgcccaagagcagg
actggtaaaaaggcgacgacgtccacgaccgccaagagcgtctcggagatgccggatttc
gtggcgccgcagctttgcacgccggtcgagcggccaccgtccggcgatcgctggtgccac
gaaatcaagttcgacggttaccgtgtgcagctccgggtcgagggaggcaacgcgacgctg
aagacgcggacggggctcgactggactgacaagttcgccgcgatcgcgaaggaggcaaat
gcgctgcccgacgtcatgatcgatggcgagatcgttgcgctggatcataacggtacgccg
aatttttcgtcgctccaggccgcgctgtcggacggcaagaccgaagacctgatcttcttc
ggcttcgacctcttgttcgccgatggcctcgattatcggcgactgccgctcggcgcgcgc
aaggcgcggctcaaggagttgctcgcggcgcgcaagcgaaagtcgaaccagatccgctac
gtcgagcatttcgagagtgatgccgacacggtgctgcaatcggcgctgaagctcgagctc
gagggcgtggtctcgaaaaagctcgacgcgccttatcgttcggggcggacggaaagctgg
accaagacaaaatgccgcgccggccaggaggtcgtgatcggtggctggaagacgacggcc
ggaaagttccgctcgctgatggccggggtctatcgcggcgatcatctcgcctatgtcggc
atcgtcggcaccggttttggagccgacaaggtcaagcgtatcatgccgttcctgaaagag
gcggcatcgagcgaaaatcccttcggcggcaagaacgcgccgaagaagacgcgcgacgtg
cactggctgaagccggagctggtcgccgagatcgaattcgccggcttcaccgccgacgga
aatatccgccaggccgcgttcaagggcctgcggcaggacaagccggctgaggaggtcgag
gctgaaatgcccgcagataccaggcttgcgcagccgaccgccagaaagcgcgccccggca
aaatccggaaaagcaaaggacgccggcaccgccgaggtgatgggcgtcgcgatctcaaaa
ccggacaaggagctgtggcccgacggcggcgacggcgagggcgtcacgaagctcgacctc
gcgcgctatttcgaggcgatcggtgactggatgatcacgcatctgaaggggcgtccctgc
tccatcctgcgcgcgcccgatggcatcggcggggagacattcttccagcgtcacgccatg
cagggtggctcgaagctgctcgagctcgcaaaggtctcgggcgagcgcaagccgtatctc
gagatcaaccgggtcgaggggctcgccgccgtcgcgcagatcggcggcctcgagctgcat
ccatggaattgcgcgcctggtgcctatgacacgccgggccggctggtgttcgatctcgat
cctgcgccggacgtcgctttcgccgatgttgtcgaggccgcgaaggagatgcggcagcgg
ctggccgacgtcggcatggagagcttttgcaagaccaccggcggcaagggcctgcatgtg
gtggtgccgctgctctttgggacgcgcgacaaggtcagctggaaggaggccaaggccttt
gcgcaaggagtctgccagtggatggcgaatgacggtcccgagcgctatctgctcaacatg
tccaagaagctgcgcaacgggaagatctttctggattatctgcgcaacgatcgcctgtcg
acggcggtggccccgctgtcgccccgcgcccgcgacggtgccacggtgtcgatgccggtg
acctgggcgcaggtgaagggtgatctcgatccgatgcggtatacggtgcggacggtgccg
gggctgctggcgcgatcgaaggcgtgggatggatacgatgatgcggctgcgtcgatcaaa
gctgcaatgaagacgctcgcggcgaagaagtag

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