Bradyrhizobium commune: IC761_17860
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Entry
IC761_17860 CDS
T09283
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcou
Bradyrhizobium commune
Pathway
bcou03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IC761_17860 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcou03400
]
IC761_17860 (mfd)
Enzymes [BR:
bcou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IC761_17860 (mfd)
DNA repair and recombination proteins [BR:
bcou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IC761_17860 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
SecA_DEAD
AAA_25
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QPF95023
UniProt:
A0A7S9H2U3
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All DBs
Position
3784144..3787662
Genome browser
AA seq
1172 aa
AA seq
DB search
MKQGMKSPAELLTPGRALTLANVAEGAEGLVISDLARAIAARPKKPAVSLAVVCRDGARM
QQLERALQFFAPDLPVLIFPAWDCQPYDRVSPHGGILAQRLTTLARLAALTGSDKPLIVL
TTVNAVVQRVPARELVAAQALSVAPGNVVPMDTIVAWLEHNGYNRSSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDSLESIRSFDAETQRTMLDMRSLDLVPISEFQLVTDTIRRF
RMGYVAEFGAPERDDALYEAVSEGRRHPGMEHWLPLFQDRMDTLFDYLQGAAVAIEPQAE
DAVRERFKQILDYYQARREAMEHPGGGALYKPLPPDRLYLTEEEWAKRLGDIPLARLTQF
SVPADGTSVVDAGARKGRDFAPERNDTTVNVFESVVSHVMALQAQRKKVVIALWSEGSRD
RMTSMLRDHKLTHTTSVNSWRTVQATPRNETMLAVLGLESGFETDEIALISEQDILGDRL
VRPRKASRKLDNFISEVTSLTAGDIVVHVDHGIGRFIGLQTLDVAGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDQTTVELDRLGGSGWQTRKAKLKNRIREIAGELIKIAAARHLH
EAPKLPVQQGLYDEFCARFPYDETEDQLGAIESTLKDLELGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGKQVAVVVPTTLLARQHAKTFTERFKGFPVNVAQASRLVATKELNLVKKG
IADGSVDIVVGTHALLGKAIKFRDLGLVIVDEEQHFGVTHKERLKALRAEVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IDDLAEVKDFLDKNVPEMKVGVAHGQMPPAVIEDIMTAFYDGKFDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLTVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVSEPAADRW
SPTITIGMPVLIPEDYVSDLSVRLSLYRRLADLDSEEEIENFGAEMRDRFGVLPDEVRYL
FKVAAIKAFCRQANVEKIDAGPKGAVITFRDNSFAHPDRLVSFIRSYGQAAKVRPDMKVV
FLQDWETPEERLVGTTEIMRQLAQLARSKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcaggggatgaaatctccggccgagctgctcacgcccggccgcgcgctgacgctt
gccaatgtcgcggaaggcgccgaaggcctcgtcatctccgatctcgcccgcgccatcgcg
gcgcggccgaagaagccggccgtcagcctggccgtggtctgccgcgacggcgcgcggatg
cagcagctcgaacgcgcgctgcaattcttcgcgcccgatctgccggttttgatcttcccg
gcctgggactgccagccctatgaccgcgtctcgccgcatggcggcattctggcgcagcgc
ctgaccacgctggcgcggcttgccgcgctcaccggcagcgacaagccgctgatcgtgctg
accacggtgaacgcagtcgtgcagcgcgtgcccgcgcgcgagctcgtcgcggcgcaggcg
ctctcggttgcacccggcaatgtcgtgccgatggacaccatcgtcgcctggctcgagcac
aacggctacaaccgctcctcgaccgtgcgcgagcccggggaatacgccgtgcgtggcggc
atcctcgatctgttcccggccggcctcgaccagccggtgcgcttcgacttcttcggcgac
agcctggaatcgatccgctcgttcgatgccgagacccagcgcacgatgctcgacatgcgc
tcgctcgatctggtgccgatctcggaattccagctcgtcaccgacaccatccgccgcttc
cgcatgggctatgtcgccgaattcggcgcgcccgagcgcgacgatgcgctgtacgaggcc
gtcagcgaaggccgccgccatcccggcatggagcactggctgccgctgttccaggaccgg
atggacacgctgttcgactatctgcaaggcgcggccgtcgcgatcgagccgcaggccgag
gacgccgtccgcgagcgcttcaagcagatcctcgactattaccaggcccgccgcgaggcg
atggagcatcccggcggcggcgcgctctacaagccgctgccgccggatagactttatctg
accgaggaggagtgggccaagcgtctgggcgatatcccgttggcccggctgacgcagttc
tccgtgccggccgatggcaccagcgtcgttgatgccggcgcgcgcaagggccgcgacttc
gcgccggagcgcaacgacaccaccgtcaacgtgttcgagtccgtcgtcagccacgtgatg
gcgctccaggcgcagcgcaagaaggtggtgatcgcgttgtggagcgaaggctcgcgcgat
cgcatgacctcgatgctgcgcgaccacaagctgacccacaccaccagcgtcaacagctgg
cggacggtgcaggccacgccacgcaacgagaccatgctcgccgtgttgggcctcgagagc
ggtttcgagaccgacgagatcgcgctgatcagcgagcaggacattctgggcgaccgcctg
gtgcgtccgcgcaaggccagccgcaagctcgacaatttcatttcggaggtgacgagcctc
accgccggcgacatcgtcgttcatgtcgatcacggcatcggccgcttcatcggtctccag
acactggacgtcgccggcgcgccgcatgactgcctcgagctgcattatgcggccgaaaca
aaactattcctgccggtcgagaacatcgagctgctgtcgcgctacggttccgaccagacc
acggtcgagcttgaccgtctgggtggctccggctggcagacccgcaaggcgaagctgaag
aaccgtatccgcgagatcgcgggcgagctgatcaagatcgcggccgcgcgccatctgcac
gaggcgcccaagctgccggtgcagcagggcctctatgacgagttctgtgcccgcttcccc
tatgacgagaccgaggaccagttaggggccatcgaatccaccctgaaggatctcgagctc
ggccgtcccatggaccgcctgatctgcggcgacgtcggtttcggcaagaccgaagtcgcg
ctacgcgcggcgttcgccgtcgcgctcgaaggcaagcaggtcgcggtggtggtgccgacc
acgctgttggcccgccagcacgcaaagaccttcacagagcgcttcaagggctttccggtc
aacgtggcgcaggcctcgcgcctggtcgcgaccaaggagctcaacctggtcaagaagggc
atcgccgatggctcagtcgacattgtcgtcggcacccatgcgctgctcggcaaggcgatc
aaattccgcgacctcggcctcgtcatcgtcgacgaggagcagcattttggcgtcacccac
aaggaacggctgaaggcgttgcgcgccgaggtgcacgtgctgacgctgtcggcaacgccg
atcccgcgcacgctgcaactcgcgctgacaggtgtccgcgagctctcgatcattgcttcg
cccccggtggatcgactggcggtgcgcaccttcgttgccccgcacgatccgctgatgatc
cgtgaggcgctgctgcgcgagcgctatcgcggcgggcaggcgttctacgtggtgccgcgc
atcgacgacctcgccgaggtcaaggacttcctcgacaagaacgtgccggagatgaaggtc
ggcgtcgcgcacggccagatgccgcccgccgtgatcgaggacatcatgaccgcgttttac
gacggcaagttcgacatcctgctgtcgaccacgatcgtggagtcagggctcgacatcccc
aacgccaatacgctgatcgtgcatcgcgccgacatgttcggcctggcccagctctaccag
ctgcgcggtcgcgtcggccgttcaaaattgcgggcgtatgcgctgttcacgctgccggcg
cagcagaagatcacggcgcaggccgagcgccggctcaccgtgctgcaatcgctggagacg
ctcggcgccggcttccagctcgcttcccacgacctcgacatccgcggcgccggcaatctg
ctcggcgaggagcagtccggccacatcaaggaggtcggcttcgagctctaccagtcgatg
ctggaggaggcgatcgtcaacctcaaggccggcgtctccgagcccgccgccgaccgctgg
tcgccgaccatcacgatcggcatgccggtgctcatccccgaggattacgtcagcgatctc
tcggtgcggttgtcgctgtaccggcggctcgccgatctcgacagcgaggaggagatcgag
aactttggcgccgaaatgcgtgaccgctttggcgtgttgccggacgaggtgcgctatctg
ttcaaggttgccgcgatcaaggcgttctgccgccaggccaatgtcgagaagatcgatgcc
ggcccgaagggcgccgtcatcaccttccgcgacaattcgtttgcccatcccgaccgcctg
gtgtcgttcatccgaagctacggccaggccgcaaaagtgcggcccgacatgaaggtggtg
ttcctccaggattgggagactccggaggagcggctagtcggcaccaccgagatcatgcgc
caacttgcccagctcgcgcggagcaagaaggcggcgtag
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