Beutenbergia cavernae: Bcav_0653
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Entry
Bcav_0653 CDS
T00893
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcv
Beutenbergia cavernae
Pathway
bcv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bcav_0653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcv03400
]
Bcav_0653
Enzymes [BR:
bcv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bcav_0653
DNA repair and recombination proteins [BR:
bcv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bcav_0653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ACQ78915
UniProt:
C5BY21
LinkDB
All DBs
Position
727701..730151
Genome browser
AA seq
816 aa
AA seq
DB search
MAAGDGGARVRVDGRVLSLTNLDKVLFPATGTTKAELIDYYRRIAPVMIPHLAGRAVTRK
RWPNGVETEPFFTKNLDSGTPDWVPRRGIVHHERTSTYPLVEDTATLVWLAQMASIELHV
PQWRFPPGDSPFVLDGSATRPDRFVLDLDPGPGVGLAQCAEVALAAKGYLDDVGLAAIPV
TSGSKGLHLYATIHGVSSEQASAFAKELAGHLAEDLPQLVVTQMKRSLRDGKVFVDYSQN
NAAKTTVSPYSVRGRDQPWVAAPRTWGELGEPGLAHLELGEVLERAADGDLLAPLLPPDP
LSTYRAKRDSARTPEPVPFAAPVAAPAGDPRFVIQEHHARRLHWDLRLEHDGVLASWAVP
RGVPTTTGHNRLAVHTEDHPMEYLTFHGSIPKGEYGGGEMTVWDTGTYTPEKFRDDEVIF
VLHGQRVQGRFALIRTDPGRGGGKEQWLLHLMKDQSGVATSPEKRAHAVVDAPDAAADDG
AHISLSDAVEPRRIAPDLRPMLATAGQVGDGDYPAREWAFEPKWDGYRALVRFSARGVAL
QSRSGRDFTQEFAELAVVPEELAAHAGVLDAEIVALDAAGRPSFHALQERGTGARPAMRL
LVFDVLHLDGTSLVNKRYSDRRQVLLALPLPAADPDHLGREERDVGGWRRSVTIGTSVRA
ALRASAEARLEGVIAKRLDARYLPGRRGHAWVKLKHSLDAEVVIGGWRPGQGRRAGGIGS
LLLGVPDDDGGLRYVGKVGTGFTDAALDALLATLEPRERTTSPFTTEVPRVEAKVAHWVR
PDVVGEVTFDSWTDDGVLRAARWRGLRPDKAPADLA
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
gtggcagcgggtgacggcggcgcgcgggtacgcgtcgacggccgcgtgctctcgctgacc
aacctcgacaaggtcctgttcccggccacgggcaccacgaaggccgagctcatcgactac
taccggcggatcgctccggtgatgatcccgcacctcgcgggccgcgccgtgacgcgcaag
cgctggccgaacggcgtcgagaccgagccgttcttcacgaagaacctcgactccgggacg
cccgactgggtgccgcgccgcgggatcgtccaccacgagcggaccagcacgtacccgctg
gtggaggacacggccacgctcgtgtggctcgcgcagatggccagcatcgagctgcacgtg
ccgcagtggcgcttcccgccgggtgactcaccgttcgtgctcgacgggagcgccacgcgg
cccgaccggttcgtgctcgacctcgacccgggccccggcgtcgggctcgcgcagtgcgcg
gaggtggcgctcgcggcgaaggggtacctcgacgacgtcgggctcgccgccatccccgtg
acgagcggcagcaagggcctgcacctgtacgccacgatccacggcgtcagctcggagcag
gcgagcgcgttcgcgaaggagctggccgggcacctcgcggaggaccttccgcagctcgtg
gtcacgcagatgaagcggtcgctccgcgacggcaaggtgttcgtcgactactcgcagaac
aacgccgcgaagaccaccgtctcgccgtactcggtgcgcgggcgggaccagccgtgggtc
gccgcgccacgcacgtggggggagctcggggaaccgggactcgcacacctcgagctcggc
gaggtgctggagcgtgccgccgacggcgacctgctcgcacccctgctgccgccggacccg
ctgtccacctaccgcgcgaagcgggactcggcgaggacgcccgagccggtcccgttcgcc
gcgcccgtggcggcgccggccggggatcctcggttcgtcatccaggagcaccacgcgcgt
cggctgcactgggacctgcggctggagcacgacggcgtgctggcgtcgtgggcggtgccg
cgcggcgtgccgacgacgacgggacacaaccgcctcgccgtccacaccgaggaccacccg
atggagtacctcacgttccacgggtcgatcccgaagggggagtacggcggcggcgagatg
accgtgtgggacaccgggacgtacacgccggagaagttccgcgacgacgaggtcatcttc
gtgctgcacggccagcgggtgcaggggcggttcgccctcatccgcaccgacccgggtcgg
ggtgggggcaaggagcagtggctgctgcacctcatgaaggaccagtccggcgtggcgacg
tcgccggagaagcgggcgcacgccgtcgtcgacgctcccgacgcggctgccgacgacggc
gctcacatctcgctcagcgacgccgtcgaaccccgccgcatcgctcccgacctgagaccg
atgctcgccaccgcgggccaggtcggcgacggcgactacccggcgcgggagtgggcgttc
gagccgaagtgggacggctaccgggcgctggtccggttctccgcgcgcggcgtggccctg
cagtcgcggtcggggcgggacttcacgcaggagttcgcggagctggccgtcgtgcccgag
gagctcgccgcgcacgccggcgtcctggacgcggagatcgtggcgctcgacgccgccggc
cgcccgagcttccacgccctccaggaacggggcaccggcgcccgccccgcgatgcggctg
ctcgtgttcgacgtgctgcacctcgacggcacctcgctcgtcaacaagaggtacagcgac
cgccgccaggtgctgctcgccctgccgctcccggccgccgacccggaccatctgggccgc
gaggagcgcgacgtcggcgggtggcgccggtcggtcaccatcggcacgtcggtgcgggcg
gcactgcgcgcgagcgcggaggcccgcctcgagggcgtcatcgcgaagcgcctcgacgcg
cgctacctgccgggccgccgcgggcacgcctgggtcaagctcaagcactcgctcgacgcc
gaggtggtgatcggcgggtggcggcccggtcagggcaggcgggccggggggatcggctcg
ctgctgctgggggtgcccgacgacgacggcggcttgcggtacgtgggcaaggtcgggacg
ggtttcacggacgccgcgctggacgcgctcctggcgacgctcgagccgcgggagcggacg
acgtcgccgttcaccaccgaggtgcctcgcgtcgaggcgaaggtcgcgcactgggtgcgg
cccgacgtcgtcggcgaggtgacgttcgactcgtggaccgacgacggcgtgctgcgcgct
gcgaggtggcgcgggctgcggccggacaaggcgccggcggacctggcctga
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