Beutenbergia cavernae: Bcav_1013
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Entry
Bcav_1013 CDS
T00893
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcv
Beutenbergia cavernae
Pathway
bcv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bcav_1013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcv03400
]
Bcav_1013
Enzymes [BR:
bcv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bcav_1013
DNA repair and recombination proteins [BR:
bcv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bcav_1013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ACQ79274
UniProt:
C5C088
LinkDB
All DBs
Position
1153699..1157316
Genome browser
AA seq
1205 aa
AA seq
DB search
MKLTGLLPVLGSDAAVARLVEELPARGSLDAIASAGVRPALLAQLLGADHPRPLVVVTAT
GREADELAAALRCYVPDDDVAVLPAWETLPHERLSPRSDTVARRLAVLRRLAHPATGADA
QPHTGPIRALVLPVRAMLQPVVTGLGDLEPVSVQVGETVDLEDLAARLTAAAYTRTDMVE
RRGDFAVRGGILDVFPPTEDHPLRLDFWGDEVEEIRWFAVADQRSLEIAPGGLWAPPCRE
LLLTPEVRARALELRAQLPGAVDMLEKMSEGIAVEGMESLAPALVDGMEQVLELVPDDAL
LVLADPERVRRRAHDLVATTEEFLAAAWTSAAAGGATPLDLSAASFATIADARDVALRRG
LGWWTLTPFTADAELADFMEEDADGGGSTTVVTIPTRDVEGYHGEISRAVADLQGLTHDG
WRLVLTTEGAGPARRMVEQLLAADVPARLEPDVEDEPETGVVHVTTAVIGKGFVAPELRL
ALFSEADLTGRAGTSTKDMRALAPKRRNVVDPLALRTGDHVVHEQHGVGRFVELVQRSIG
SGPAAATREYLVIEYAASKRGQPGDRLYVPTDALDQVTKYTGGESPSLNKMGGSDWAKTK
GRARKAVREIAGELIRLYSARMATQGFAFSPDTPWQRELEDAFPHIETPDQVVTIDEVKA
DMEKSVPMDRLVCGDVGYGKTEIAIRAAFKAVQDGKQVAVLVPTTLLVQQHFETFSERYA
GFPVTVKALSRFQTDAEATAVREGVQDGSVDVVIGTHRLLTGEVRFKDLGLVVVDEEQRF
GVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGAYE
EKQIAAAIRRELLREGQVFYVHNRVESIERAAARLQELVPEARIAVAHGKMNEHQLERVI
VDFWEKRFDVLVCTTIIETGLDISNANTLILERADVLGLSQLHQLRGRVGRGRERAYSYF
LYPPEKPLTETAHDRLATIAANTDLGSGMQVALKDLEIRGAGNLLGGEQSGHIAGVGFDL
YVRMVSEAVARFRGEETEDITDVTIELPIDAHVPHDYIAHERLRLEAYAKVAAARDETAI
AAVRDELADRYGPVPEPVERLFAVAALRAKARAHGLTDVTVQGQFVRFAPVELPESAQLR
LKRLYPRSVLKPGVRTILVPRPTTALIGGQPLRDSELLTWVSEVIDAILGGSVEAAAALA
TASRG
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcaccggactcctacccgtcctgggctcggacgcggccgtcgcgcgcctcgtc
gaggagctgcccgcccgcggatcgctcgacgcgatcgcgtcggccggcgtgcggcccgcc
ctgctcgcgcagctgctcggtgcggatcacccgcggccgctcgtcgtcgtcacggcaacg
ggccgcgaggccgacgagctggcggcggcgctgcgctgctacgtgccggacgacgacgtc
gccgtgctccccgcgtgggagacgctgccgcacgagcgcctcagcccgcgcagcgacacc
gtggcgcggcgcctcgccgtcctgcgccggctcgcgcacccggccaccggtgccgacgcg
cagccgcacacgggcccgatccgcgcgctcgtgctgccggtgcgcgccatgctgcagccg
gtcgtgaccggtctcggggacctcgaaccggtgagcgtccaggtgggcgagaccgtcgac
ctcgaggacctcgcggcgaggctgacggcggcggcgtacacgcgcaccgacatggtggag
cggcgcggcgacttcgccgtccgcggcggcatcctcgacgtcttcccgcccacggaggac
caccccctgcggctcgacttctggggcgatgaggtcgaggagatccgctggttcgccgtc
gccgaccagcgcagcctcgagatcgcgcccggcgggctgtgggctccgccctgccgcgag
ctgctcctcacacccgaggtgcgagcgcgggcgctggagctgcgcgcgcagctgccgggc
gccgtcgacatgctcgagaagatgtccgagggcatcgccgtggaggggatggagtcgctg
gccccggcgctcgtggacggcatggagcaggtgctcgagctcgtgcccgacgacgccctg
ctcgtcctcgccgacccggagcgcgtgcgccggcgcgcgcacgacctcgtcgccacgacc
gaggagttcctggcggcggcgtggacctccgcggccgccggtggcgcgacgccgctcgac
ctgtcggcggcgagcttcgccacgatcgccgatgcgcgcgacgtcgccctgcgccgcggc
ctcggctggtggacgctcaccccgttcacggccgacgccgagctcgccgacttcatggag
gaggacgccgacggcggcggctcgaccaccgtcgtcacgatccccacccgcgacgtcgag
ggctaccacggcgagatctcccgcgccgtcgcggacctccaggggctcacgcacgacggc
tggcgcctcgtgctcaccaccgagggcgccggcccggcgcgccgcatggtggagcagctg
ctcgccgcggacgtcccggcccgcctggaacccgacgtcgaggacgagcccgagacgggc
gtcgtccacgtgacgacggcggtcatcggcaagggcttcgtggcgccggagctgcgcctc
gccctgttctccgaggccgacctcaccggtcgcgccggcacgtccacgaaagacatgcgc
gcgctcgctccgaagcggcgcaacgtcgtcgacccgctcgcgctgcgaaccggcgaccac
gtggtgcacgagcagcacggcgtcgggcggttcgtggagctcgtgcagcgctccatcggg
tcgggtcccgccgcggcgacccgcgagtacctcgtcatcgagtacgcggcctcgaagcgg
ggccagcccggcgaccggctctacgtgccgaccgacgcgctcgaccaggtcacgaagtac
accggcggggagtcgccgtcgctcaacaagatgggcggctccgactgggcgaagacgaag
ggccgcgcccgcaaggcggtccgggagatcgccggcgagctcatccgcctgtactcggcg
cggatggcgacgcagggcttcgcgttctccccggacacgccgtggcagcgcgagctcgag
gacgcgttcccgcacatcgagacgccggaccaggtcgtcacgatcgacgaggtgaaggcg
gacatggagaagtcggtcccgatggaccgcctcgtgtgcggcgacgtcggctacggcaag
acggagatcgcgatccgtgcggcgttcaaggccgtccaggacggcaagcaggtggccgtg
ctcgtgcccaccacgctgctcgtgcagcagcacttcgagacgttctccgagcggtacgcc
gggttcccggtgacggtgaaggcgctgtcccggttccagaccgacgccgaggcgacggcg
gtgcgcgagggggtgcaggacggctcggtcgacgtcgtcatcggtacccaccggctcctc
accggcgaggtgcggttcaaggacctggggctcgtcgtcgtcgacgaggagcagcggttc
ggcgtcgagcacaaggagacgctcaagcagctgcggacgaacgtggacgtgctcgcgatg
agcgcgacgccgatcccgcggacgctcgagatggcggtgacgggcatccgggagatgtcc
acgctggcgacgccgcccgaggagcgccatccggtgctcacgttcgtcggggcgtacgag
gagaagcagatcgccgcggcgatccggcgggagctgctccgcgaggggcaggtgttctac
gtccacaaccgggtggagtcgatcgagcgggcggccgcccggctgcaggagctcgtgccc
gaggcgaggatcgccgtcgcccacgggaagatgaacgagcaccagctcgagcgcgtcatc
gtcgacttctgggagaagcggttcgacgtgctggtgtgcaccacgatcatcgagaccggc
ctcgacatctcgaacgcgaacacgctcatcctcgagcgggccgacgtgctggggctctcg
cagctgcaccagctccggggccgggtcgggcgcggccgggagcgtgcctactcgtacttc
ctgtacccgccggagaagccgctcacggagaccgcgcacgaccggctcgcgaccatcgcc
gccaacaccgacctgggctccggcatgcaggtggcgctcaaggacctcgagatccggggt
gccggcaacctgctcggtggcgagcagtcgggtcacatcgccggggtcggcttcgacctc
tacgtgcggatggtgtccgaggccgtggcgcggttccgcggcgaggagacggaagacatc
acggacgtcacgatcgagctgccgatcgacgcccacgtcccgcacgactacatcgcgcac
gagcgtctgcggctcgaggcgtacgcgaaggtcgccgccgcccgtgacgagacggcgatc
gcggcggtgcgcgacgagctggccgaccgctacggaccggttcccgaaccggtggagcgg
ctgttcgccgtcgccgccctgcgggccaaggcgcgcgcgcacggactcacggacgtcacc
gtgcaggggcagttcgtgcggttcgccccggtggagctcccggagtccgcacagctgcgc
ctcaagcggctgtacccgcgatcggtgctcaagccgggcgtgcgcacgatcctcgtgccg
cggccgacgacggcgctgatcggcgggcagccgctgcgggactccgagctgctcacgtgg
gtgagcgaggtcatcgacgcgatcctcggcgggtcggtcgaggcggcggcagcgctcgcg
acggcgtcgcgcggctga
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