Cytobacillus dafuensis: FSZ17_13985
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Entry
FSZ17_13985 CDS
T06982
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bda
Cytobacillus dafuensis
Pathway
bda03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FSZ17_13985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bda03400
]
FSZ17_13985
Enzymes [BR:
bda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FSZ17_13985
DNA repair and recombination proteins [BR:
bda03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FSZ17_13985
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QED50144
UniProt:
A0A5B8ZB34
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All DBs
Position
2951984..2953828
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AA seq
614 aa
AA seq
DB search
MKPMLPSLTFEVPKGNDWLYEVKYDGFRAILHWDHNEMSLISRNGKPLLNIFPEICSFLE
ANKEKLKPYLPLTFDGELVFLENAYKSQFSTIQVRGRMRSLSRIAEKAKASPCHLLIFDV
LKIKGKPLKNEDYLSRKKTLYDFFKKCNLPLMPDEMNTKLVQYIPFFNDFNEIWEKVVLF
NGEGIVAKQKTNKWEEGKRTTLWLKYKNWKYVSCFITAYEKTNGYFYVSVYQDNMVISIG
QFIFGLKPDEKKALFEIIKANKTDEDNKYIYVEPAICVEVKYLELYEGQMREPHFHQFRF
DLSPNDCTYHQFIQKQKNFPSDIDVTHPDKPLWAEPSIQKIDYIHYLQEISPYMLPFLKN
RLLTVIRYPHGIFGDPFYQKNCPEYAPEFVETEMSDEINYIICNQLKTLLWLGNQLAFEF
HIPFQTTLSKGPSEIVFDLDPPSRDAFGLAIKAALLIKEIFEQLELISFIKTSGNKGLQI
YLPLPENTYTYDETRLFTAFIAQYLVTKDPASFTIERMKKNRGNRLYVDYIQHAEGKTII
APYSPRGTKEATVAAPLYWEEVNEHLKVENFQIPQMIKRIHNKGNPFHTYFEAKEKQKFG
PILEILRNKNLPSL
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaatgctgccaagtttaacatttgaggttccaaaagggaatgactggctctac
gaagtgaaatatgatggatttcgtgcaatattacattgggatcataatgaaatgtcatta
ataagcagaaatggcaagccattattaaacattttccccgaaatatgctcatttcttgaa
gctaataaagaaaagctcaaaccttatcttcccttaacatttgatggagagctcgtcttt
ttagagaatgcatataagtctcaattttctacaatccaagtaagaggaagaatgagatct
ttgagtaggatcgctgagaaggcaaaggcatctccatgtcatctcctcatttttgatgtc
cttaaaataaaaggaaaacccttgaaaaacgaggattatctatcgagaaaaaagacactg
tatgatttttttaagaaatgtaaccttccattaatgcctgatgaaatgaatacaaagctt
gtacaatatattcccttctttaatgactttaatgaaatttgggaaaaggttgttcttttc
aacggagaaggaattgtagcaaagcaaaaaacgaacaaatgggaagaaggaaaaagaaca
acattatggttaaaatataaaaattggaaatatgtttcgtgttttatcactgcatacgaa
aaaacaaatggatacttttatgtcagtgtttatcaagacaatatggtaatatccatcggg
caattcatttttggcttaaagccagacgaaaaaaaagcattatttgaaattattaaagca
aataaaacagatgaggataataaatatatttatgttgagccggcaatctgcgtagaggtc
aaatatttggagctgtatgaagggcagatgcgagagcctcactttcaccaatttagattt
gatttaagcccaaatgattgtacctaccatcaattcattcaaaagcaaaagaatttccca
tctgatattgatgtgacacatcctgataaacctttgtgggctgaaccatcgattcaaaaa
atcgattatattcattatttacaagaaatctcaccctatatgttgccttttcttaaaaac
cgattattaactgttatacggtatccacacggtatttttggagatcctttttatcagaaa
aattgtccagagtacgctccagagtttgttgaaactgaaatgtcagacgagataaattat
attatttgcaatcaattaaagacacttctctggcttggaaatcagctagcattcgaattt
cacatcccttttcaaacgactcttagtaaaggaccgagtgaaattgtatttgatctagat
ccgccatccagagatgcatttggtctagccattaaagctgccttgttaataaaggaaatt
ttcgagcagcttgaattgattagttttattaaaacgtcaggaaacaaaggactgcaaatt
tatttaccattaccggaaaatacatatacttatgatgaaacaagattatttacagctttt
atcgcacaatatcttgtaacaaaggatcctgcttcttttaccattgaaaggatgaaaaag
aatagaggcaaccgactttatgtcgattacattcagcatgcagaaggaaaaaccattatt
gcaccctattcaccaaggggtacaaaggaggcgaccgtagctgctcctctttattgggaa
gaagtaaatgaacatctaaaggtggaaaattttcaaataccacaaatgataaaacgaatt
cacaataagggaaatcccttccatacttatttcgaagcgaaagaaaaacaaaaattcgga
ccaatattggagattttaagaaataaaaacctgccctctttatga
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