Bdellovibrio sp. NC01: DOE51_08960
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Entry
DOE51_08960 CDS
T06360
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bdc
Bdellovibrio sp. NC01
Pathway
bdc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bdc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DOE51_08960 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdc03400
]
DOE51_08960 (ligD)
Enzymes [BR:
bdc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DOE51_08960 (ligD)
DNA repair and recombination proteins [BR:
bdc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DOE51_08960 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QDK37704
UniProt:
A0A514WXB5
LinkDB
All DBs
Position
complement(1856313..1858838)
Genome browser
AA seq
841 aa
AA seq
DB search
MALQEYNRKRDFKKTAEPKGVQGKKAKGKAHHLMYVIQEHHASHLHYDFRLEWDGVLKSW
AVPKGPSLDPKTKRLAVEVEDHPLSYGKFEGIIPEHEYGGGEVFLWDTGTWIPTKDPVEG
LRVGRLEFELKGKKLKGQWVLIRTGRPGRQKQWLLIKRTDAYAEEGHEVVPRSEDKLSIK
KKTSRKKAASKPNVKKKPEENHHQQPTFIEPELALLVDKAPEGDQWIHELKFDGYRMQAH
LIHSQVQLISRSGKDWTDKFPAVVQALQKLTVDRAIIDGEVVLLDEQGRSDFQLLQNAMK
AHKTQAFVYYAFDLLYYSGQDIRGLPLEERKRRLKMILKKAPKNIRYSDEFEGSGKQLLD
LACKNKLEGIISKNRKSTYFSGRNSNWVKTKCTEQQEFVIGGYTEGTGSRSHFGALLLGV
YKGKDLQYVGKVGTGFTEQSLRDVFKSLKALETNQSPFTKKSPRGKGIHWVKPKLSAEIT
FAQWTHDEVLRVPVFHGLREDKPTKDIVMEKPVPTKRSSSSKISQPVHAKKSAKGEFDIA
ISSPDKIIYPKEKLTKMDIAVFYQKIAKHILPYLEDRPLSLVRCPEGADKQCFFQKHIPS
PIPETMKAIPITEKSGKKLYTSIFNAQGLTTLVQMGAFEIHVWNSQAENLEHPDQIVMDF
DPGPGVSWKEVVTAALELKDLLDHLRLKSFVKLSGSKGLHVHIPVKPIYTWDQIKSFSQA
LAVQMEQNNPDKYVSKMTKKLRTKKIFVDYLRNGRGATAVVPYSLRARPLSGVALPIEWS
DLKKIKAGNEYSLEKAQAYLAKRKKDPWKDYFKSRQRIPVLDASLKGHRNAEVDAEEIHL
T
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggctttgcaggaatataatcgcaaacgagatttcaaaaaaaccgctgaacctaaaggg
gttcaaggcaagaaagcaaaaggcaaggcccatcacttaatgtacgtgattcaagaacat
catgcgtcccatcttcattatgattttcgtttggaatgggatggtgttttgaaaagctgg
gccgtacccaaaggccccagtcttgatcccaaaaccaaacgtcttgcagttgaggtggaa
gatcatcccctttcttatgggaaatttgagggcatcattcccgaacatgaatacggcgga
ggcgaagtgtttctttgggacacaggcacctggattccaaccaaagatcctgtggaaggt
ttacgtgtcggtcgcttggaatttgagctgaaaggaaaaaaacttaaaggccagtgggtt
ttaattcgcacgggtcgacctggacgccaaaaacaatggctgttaatcaagcgcacggac
gcttacgctgaagaaggccatgaagtcgttccgcgcagtgaagataaactttcaattaag
aagaaaaccagccgcaaaaaagccgcttctaaacccaacgtaaaaaaaaagcccgaagaa
aaccaccatcaacagcccacgttcattgaaccggaacttgcactcttagttgataaagcg
cctgaaggcgatcaatggattcatgagctcaagtttgatggctatcgcatgcaagcgcac
ctgattcattcacaggtacagctaatctcgcgatctggcaaagactggactgataaattt
ccggccgtggttcaagctttacaaaaactaactgtcgatcgagctatcatcgatggcgaa
gttgttttactggacgaacaaggacgatctgattttcagctgttgcaaaatgcaatgaag
gcccacaaaacacaagcgttcgtctattacgccttcgatctgctatactactcaggccaa
gatattcgcggtttacccttggaagagcgtaaacgtcgcttaaaaatgattttaaagaaa
gccccaaagaacattcgctatagtgatgaattcgaaggctcaggcaaacaacttttagac
cttgcctgcaaaaacaaacttgaaggtatcatctcgaaaaatcgtaaaagcacttatttt
tcaggacgaaattccaattgggtcaaaaccaaatgcacagagcaacaagagttcgtgatt
ggcggctacaccgaaggcacaggctcgcgttcgcactttggcgcgctgctgttgggtgtt
tataaaggcaaagatctgcaatacgttggcaaagtaggaaccggatttactgagcaatcc
ctgcgcgacgtctttaaatctttaaaggcgctagaaacaaatcaatccccgttcactaaa
aaatcccctcgcggcaaaggcattcattgggtgaagcctaagttaagtgcagaaataact
ttcgcacagtggactcacgatgaagttttgcgcgttcctgtttttcatggtcttcgcgaa
gacaaaccaaccaaggatattgtcatggaaaaacccgtgcccacgaaacgatccagttcg
agcaaaatatcgcagccagttcacgcaaaaaaatctgcgaagggcgaatttgatatcgcg
atttctagtcctgataaaataatttatcccaaagaaaagctgacaaagatggatatcgcc
gtcttctatcagaaaatagcaaaacatattctgccgtatttggaagatcgtcccctgtca
ttggttcgctgtccagagggcgctgataaacaatgtttctttcagaaacacatcccttcc
cctattccagaaaccatgaaggcaattccgatcacggaaaaatcaggaaaaaaactttat
accagcatcttcaacgctcaaggcttaacgacccttgtacaaatgggtgcttttgaaatt
cacgtctggaattcgcaagctgaaaacctggaacatcccgatcaaatcgtgatggatttc
gatccaggcccgggagtcagctggaaagaggtcgtcactgcagcccttgaattaaaagat
cttttagatcatctgcgtttaaaaagtttcgtcaaactcagcggcagcaaaggtcttcac
gttcatattcctgtgaagcctatctacacatgggatcagatcaaaagctttagccaagca
ctggcagtccagatggaacaaaataatccagataaatacgtttcaaaaatgacgaaaaaa
ctgcgcacaaaaaaaatcttcgtcgactaccttcgaaacggcagaggcgccacagcggtc
gttccttattcactgcgagcacgccccttaagcggcgtcgcacttcccatcgaatggtct
gacttaaaaaaaataaaagccggcaacgaatactcgctagaaaaagcacaggcctattta
gcaaaacgtaaaaaagatccatggaaagattattttaaaagcagacaaagaatcccagtc
ttagacgcaagccttaaaggccaccgcaacgccgaagttgacgctgaagaaattcaccta
acataa
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