Burkholderia diffusa: WI26_09255
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Entry
WI26_09255 CDS
T04698
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bdf
Burkholderia diffusa
Pathway
bdf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WI26_09255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdf03400
]
WI26_09255
Enzymes [BR:
bdf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WI26_09255
DNA repair and recombination proteins [BR:
bdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WI26_09255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AOI57778
UniProt:
A0A1B4BT04
LinkDB
All DBs
Position
1:2012361..2015831
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AA seq
1156 aa
AA seq
DB search
MPDNASTPFASPVARVKPGQRFAFDGAHGSADALVIARYLADNRDAVPLLAVICANAVDA
QRLSQELRYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFAGDLEASI
RRFTADTKQRHAFLAHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATGLP
ELTVDRHADDPLAALRTFVESSGKRVLLTVESAGRRETILQLLAEHHLRPASNDHFAGWL
ESDASFALGVAPLASGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALEPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEELVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGIV
KIDASEAAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALAPRADAASAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagacaacgcttctaccccgttcgcctcgcccgtcgcccgcgtcaaaccgggccag
cggttcgccttcgacggcgcgcatggctccgccgacgcgctcgtcatcgcccgctatctc
gccgacaaccgcgacgcggtcccgctcctcgcggtgatctgcgcgaacgcggtcgacgcg
cagcggctgtcgcaggaactccgctacttctcgcccgatgcgcgcgtgcgtctgctgccg
gactgggaaacgctgccgtacgacacgttctcgccgcaccaggatctcgtctccgagcgc
ctcgcgacgctgcacgacctcggcgaggggcgctgcgacatcctgctggtgcccgcgacc
acggcgctgtaccggatgccgcccgcgtcgttcatggccgcgtacacgttcgcgttcgcg
cagggcgagcggctcgacgaagcgaagctgaaggcacagctcacgctggccggctacgag
cacgtgagccaggtcgtgcgccccggcgaatactgcgtgcgcggctcgctgatcgacctg
tacccgatgggctcgccgctgccctaccggatcgatctgttcgacgaccaggtcgactcg
atccgtgcattcgatcccgatacgcagcgcagcctctatccggtgcgcgacgtgcgcctg
ctgcccgggcgcgagtttccgttcgacgaagccgcgcgcacggccttccgcagccgctgg
cgcgaaaccttcgaaggcgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtattacctgcccctcttcttcgacgagacggccacgctg
ttccactacctgccgcaggatgcgcatctggtgttcgccggcgacctcgaagcgtcgatc
cgccgcttcacggccgatacgaagcagcgtcacgcgttcctcgcgcacgatcgcgagcgg
ccgatcctcgagccgcagcgcctgttcctgtccgacgaggatttcttcgcattcgcgaag
ccgttcgcgcgcgtcgtgctgcccgcgcagccggccggcggctgggcgaccggcctgccc
gagctcaccgtcgatcgccatgccgacgatccgctcgccgcgctgcgcacgttcgtcgaa
tcgtccggcaagcgcgtgctgctgacggtcgaatcggcaggccgccgcgaaacgatcctg
caactgctcgccgagcatcacctgcgccccgcgtcgaacgaccacttcgcaggctggctc
gaaagcgacgcgtccttcgcgctcggcgtcgcgccgctcgcgagcggtttcgcggtgccg
ggcgaaggctatgcgatcgtcaccgaaaccgagctgtacggtgcgctcggccgccgcgcc
gggcgccgccgccaggaacaggcgagcaacgtcgacgcgatggtgcgcgacctgtcggag
ctgaaggtcggcgatcctgtcgtgcacgcgcagcacggcatcggccgctacatgggcctc
gtgtcgatggatctcggcgaaggcgagaccgagttcctgcatctcgaatacgcgggcgac
agcaagctctacgtgccggtcgcgcaactgcacgtgatctcgcgttacagcggcgccgat
cccgacagcgcgccgctgcacgcgctcggctccggccagtgggagcgcgcgaagcgcaag
gccgcgcagcagatccgcgacacggccgccgagctgctgaacctgtatgcgcgccgcgcg
gcccgcgaaggccatgcgttcgcgctggaaccgcgcgactacgtgaagttcgcggaaagc
ttcggcttcgaggagacacccgaccaggccgcggcgatcgcggccgtgatcggcgacatg
accagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gtcgcgctgcgcgccgcgttcatcgcggtgatgggcggcaagcaggtcgcgctgctgtcg
ccgaccacgctgctcgccgagcagcacacgcagaccttcgccgaccgtttcgcggactgg
ccggtgcgcatcgtcgagctgtcgcgcttcaagaccgcgaaggaagtgaacgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacccacaagctgctgtcgtcg
gacgtgcagttcaagcgtctgggcctcgtgatcatcgacgaggagcaccgcttcggcgtg
cgtcagaaggaagcgctgaaggcgctgcgcgcggaagtcgacgtgctgacgctgaccgca
acgccgatcccgcgcacgctcggcatggcgctcgaagggctgcgcgacttctcggtgatc
gccaccgcgccgcaaaagcggctcgcgatcaagaccttcgtgcggcgcgaggaagaaagc
gtgatccgcgaggcgatgctgcgcgaactgaagcgcggcggccaggtgtacttcctgcac
aacgaggtcgagacgatcgagaaccgcaaggcgatgctcgaggagctcgtgcccgaagcg
cgcatcgtgatcgcgcacggccagatgcacgagcgcgaactcgaacgcgtgatgcgcgat
ttcgtcgcgcagcgcgccaacgtgctgctgtgcacgaccatcatcgagaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcatcgcgcggacaagttcggtctcgcgcagctg
caccagttgcgcggccgcgtcggccgttcgcaccaccaggcgtatgcctacctgctggtc
cacgacccgcagtcgctgaccaagcaggcgcaacgccggctcgaggcgatccagcagatg
gaggaactcggttcgggcttctatctcgcgatgcacgacctcgagatccgcggcaccggc
gaggtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctttacacc
gacatgctgaacgacgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcc
ccgctcgccgcgacgacggaaatcaacctgcatgcgcccgcgatcctgccggccgattac
tgcgcggacgtgcaggagcggctgtcgctgtacaagcgtctcgcgaactgcgagcacggc
gacgcgatcgacggcatccaggaagagctgatcgaccgcttcggcaagctgccgccgcag
gcgcacgcgctcgtcgagacgcaccggctgcggctggccgccaagccgctcggcatcgtc
aagatcgacgcgagcgaggccgcgatcgggctgcagttcgagccgaacccgccgatcgat
ccgatgcggatcatcgagatggtgcagaaacaccggcacatcaagctcgcgggccaggac
aagctgcgcatcgagacgcgctcgcccgacctcgcgatccgcgtgtcgacgatcaaggag
acgctgcgcgcactcgcgccgcgcgccgacgcggcgagcgcggcacgttga
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