Bradyrhizobium daqingense: LPJ38_13595
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Entry
LPJ38_13595 CDS
T07756
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bdg
Bradyrhizobium daqingense
Pathway
bdg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bdg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LPJ38_13595 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdg03400
]
LPJ38_13595 (ligD)
Enzymes [BR:
bdg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LPJ38_13595 (ligD)
DNA repair and recombination proteins [BR:
bdg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LPJ38_13595 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UFS91710
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All DBs
Position
2834278..2836965
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AA seq
895 aa
AA seq
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MLQKLSTYRQKRDFEKTPEPSGKSAVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESDDPEAGFK
KGDLKFTLHGEKLHGSWVLVRMRNDRTGGKRTNWLLIKHRDEHVREGADNDILDQDKSVA
SGRAMEQIAEGKGRAPKPFMLAKGAKGKADAVWQSNRAEETKGRTVKPAPRTALKSGKSA
RKKATTATNAKKVSEMPDFVAPQLCTLVERPPGDQGWCHEIKFDGYRVQLRVEDGEATLK
TRKGLDWTEKFAAIAEEAAALPDVMIDGEIVALDHNGAPNFSSLQAALSDGKTDELIFFA
FDLLFAKGEDYRRLPLGERKAQLKKLLDSRKRKSTQIRYVEHFESGGDAVLQSACKLELE
GVVSKKLDAPYRSGRTESWVKSKCRAGHEVVIGGYKTTNGKFRSLMAGVQRGDHLAFVGM
VGTGFGADKVKRLMPSLKAMAAKESPFGGKNAPKKTREVHWLKPELVAEIEFAGFTADGN
IRQAAFKGLRQDKSAEEVEAETPVDTELAEPTAKKTPARSRARTGRQPKQAAQNAEVMGV
VISKPDKQLWPDDGDPVTKLDLARYLEAIGEWMIVHLKGRPCSLIRAPDGIKGECFFQRH
AMQGTSNLLELARVSGDRKPYLQIDRIEGLAAVAQIGGVELHPWNCAPYAYDTPGRLVFD
LDPAPDIEFADVVEAAKEMRQRLADIGMESFCKTTGGKGLHVVVPLLHGARDKVSWKEAK
AFAQGVCQWMADDDPERYLLNMSKKLRKGKIFLDYLRNDRMSTAVAPLSPRARAGATVSM
PVTWAQVKSDLDPKRYTMRTVPSLLARSKAWEGYDDAAVSIKAAIKKLAGKSRVG
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcaaaaactctccacctaccgacagaagcgtgacttcgagaagacgcccgagccg
tcgggcaagtccgcggtggcgccctcgaagcagcggcgcttcgtgatccaaaagcacgat
gcgacccggctgcattacgatctcaggctcgagttcgacggcgtgttcaaatcctgggcg
gtgacgaagggaccctcgctcgatccgcacgacaagcggctggccgtcgaggtcgaggac
catccactcgattacggtgatttcgaaggcacgattccggaagggcagtatggcggcggc
acggtgatgctgtgggaccgtggcacctgggaatcggatgatccggaagccggtttcaag
aagggcgatctgaagttcacgctgcatggcgagaagctgcatggcagctgggtgctggtg
cgcatgcgcaacgaccgcaccggcggcaagcgcaccaactggctcctcatcaagcatcgc
gacgagcatgtccgcgaaggcgcggacaacgatattctcgaccaggacaagtccgtcgcc
tccggccgcgcgatggagcagatcgccgagggcaagggccgcgcgccaaagccgttcatg
ctggcgaagggcgccaagggcaaggccgacgcggtctggcagtccaaccgcgcggaggag
acgaaggggcgtacggtcaagccggcaccgcgcacggcgttgaagtccggcaaatcggcg
cggaagaaggcgacgacggcgacgaacgcgaagaaggtctcggagatgccggatttcgtc
gcgccgcagctctgtacgctggtcgagcggccgccgggcgaccagggctggtgccacgag
atcaagttcgacggctaccgcgtccagctgcgcgtcgaggacggcgaggcgacgctgaag
acgcgcaagggcctcgactggaccgagaagtttgccgccattgccgaggaagcggctgcg
ctgccggacgtgatgatcgacggcgagatcgtcgccctcgaccacaacggcgcaccgaac
ttctcctcgcttcaggccgccctgtccgatggcaagaccgacgagctgatcttctttgcc
ttcgacctgctgttcgcgaagggggaggattaccgccggctgccgcttggcgagcgcaag
gcgcagctcaagaagctgctggactcgcgcaagcggaaatcgacccagatccgctatgtc
gagcatttcgaaagcggcggcgatgccgtgctgcaatcggcctgcaagctcgagctcgaa
ggcgtggtatcgaagaagctggatgcaccctatcgttcggggcgtaccgagagctgggtc
aagtccaaatgtcgcgcgggccacgaagtggtgatcggcggctacaagaccaccaacggc
aaattccgctccctgatggccggcgtgcagcgcggcgatcatctcgccttcgttggcatg
gtcggcaccggcttcggcgcggacaaggtcaagcgcctcatgccgtcgttaaaggccatg
gcggccaaggaaagcccgttcggcggcaagaacgcgccgaagaagacccgcgaggtgcac
tggttgaagccggagctcgtcgccgaaatcgagtttgccggcttcaccgccgacggcaat
atccgccaggccgcgttcaagggcctgcggcaggacaagtctgccgaggaggtcgaggcc
gagacaccggtcgatactgagcttgccgaaccgacagccaagaaaacaccggcgagatcg
cgtgcgaggacgggccgccagccgaaacaggccgcccagaacgccgaggtcatgggtgtc
gtcatctccaagcccgacaagcagctctggccggacgatggcgatcccgtcaccaagctg
gaccttgcgcgctatctcgaagccatcggcgaatggatgatcgtgcacctcaagggcagg
ccctgttcgttgatccgcgcccctgacggcatcaagggcgagtgcttcttccagcgccat
gccatgcaggggacgtcgaacctcttggaactcgccagagtctccggcgaccgtaagccg
tatttgcagatcgaccgaatcgaagggctcgcagcggtggcgcagatcggcggtgtcgag
ctgcatccttggaattgcgcgccctatgcctatgatacgccgggccggctggtgttcgat
ctcgatccggcacccgacatcgagttcgccgacgtcgtcgaggccgccaaggagatgcgg
cagcggctcgccgacatcggcatggagagcttctgcaagaccaccggcggcaagggcctc
cacgtggtggtgccgctgctgcacggcgcgcgcgacaaggtgagctggaaggaggccaag
gcgtttgcgcaaggcgtctgccagtggatggccgatgacgatccggagcgctatctgctc
aacatgtcgaagaagctgcgcaaggggaagatcttcctggactacttgcgcaacgaccgc
atgtcgaccgcggttgccccgctgtcgccgcgcgcgcgggccggcgccaccgtgtcgatg
ccggtgacctgggcgcaggtcaaaagtgatctcgatccgaagcgatatacgatgcgcaca
gtgccgtcgctgctggcgcgatcgaaggcgtgggagggttacgatgatgccgccgtatcg
atcaaggcggcgatcaagaagctggcggggaaaagtagggtgggttag
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