Brachypodium distachyon (stiff brome): 100827851
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Entry
100827851 CDS
T01717
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03022
Basal transcription factors
bdi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100827851
09124 Replication and repair
03420 Nucleotide excision repair
100827851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100827851
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100827851
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100827851
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100827851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
100827851
NCBI-ProteinID:
XP_003580836
UniProt:
I1J3F3
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All DBs
Position
5:27566247..27572186
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AA seq
451 aa
AA seq
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MPQVMVVARNFMDMVAALPAAKLDMLYDSAFICEAVLRSFPPLAKKYALQMLYVSAPMPA
AAMEEWVLDEYASKHKVAIDRLLQLRVFVEVRDRRKEVSYKMNDKFQGNMQKYLVDGGSL
PREPISSSVTGRLPTLTELENYALEQWECFLLQLINSSQVERGTSFSSSMMKTFQRGLLS
SRDGDAPKLSENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTLGA
AYSFNTLTDVQRIAIRDLAELGLVKVQQGRKDSWFIPTKLATNLSSSLSDSSASKEGIVV
VETNFRLYAYSASRLHCEILRLFSRVEYQLPNLIVGAITKESLYGAFDNGITAEQIISFL
KQNAHPRVADKIPVVPENVTDQIRLWETDRNRVDMVLSHVYEDFPSKDMFEQCCDLARDN
GFLLWEDSKKMRLIVRVEFHQEMREFLRRQR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtgatggtggtcgcgcggaacttcatggacatggtggccgcgctgcctgct
gccaaactcgacatgctctatgattccgccttcatctgtgaggctgtgctcaggtcgttc
ccaccgctagcaaagaagtacgcgcttcagatgttgtacgtgtcagcaccgatgcccgct
gcggctatggaggagtgggtgctggatgagtatgcctccaaacacaaggttgccatcgat
aggctgctccaacttagggtctttgtcgaagtacgtgatagaagaaaagaggtgagctac
aagatgaatgataagttccaggggaacatgcagaagtatttggttgacggtggaagttta
ccaagggaaccgatatcatcaagtgtcactggcagattgcccacactaacagaactagaa
aactacgcccttgagcaatgggagtgctttttgctgcaattaataaattcatctcaagtt
gagagagggacaagtttcagctcgtctatgatgaaaacatttcagcgaggtcttctgagt
tcaagggatggcgatgctccaaagttaagtgagaatggcttccagtttctgctgatggag
acaaatgcgcaactttggtacataatgcgagaatacatttcatcagcagaggaacgtgga
gtagaccctacggagttgatctcatttctcttggaacttagttttcatacactgggagcg
gcttatagcttcaatactctgactgatgtccaaagaattgctattagagatctggcggag
ctggggttagtcaaagtgcagcagggacggaaagatagctggttcatacctacaaaattg
gccacaaacctctcatcgagcttgtcagattcttctgccagcaaagagggtattgtggtt
gtggagacaaactttaggttatatgcatactctgcttccagattgcactgtgaaattcta
cgccttttttcaagggtggagtatcaacttccaaacctcatcgtgggagctattacaaaa
gaaagtctttatggtgcttttgacaatgggatcactgctgaacagataatttcattcctt
aagcaaaacgcccacccccgcgttgccgacaaaatacctgttgtgccagagaatgtgaca
gatcagattaggttgtgggagaccgatcgaaacagggttgacatggtcctgtcacatgta
tacgaagattttccgagcaaggacatgtttgagcaatgctgtgatcttgcaagggataac
ggtttcttgctctgggaggactcaaagaagatgagattgatagtacgagtagagttccac
caagagatgcgggagttcctccgcaggcaaagatga
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