Brachypodium distachyon (stiff brome): 100832078
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Entry
100832078 CDS
T01717
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100832078
09122 Translation
03013 Nucleocytoplasmic transport
100832078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100832078
03041 Spliceosome [BR:
bdi03041
]
100832078
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
100832078
Spliceosome [BR:
bdi03041
]
Complex C
Other components
EJC/TREX
100832078
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100832078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
HODM_asu-like
Motif
Other DBs
NCBI-GeneID:
100832078
NCBI-ProteinID:
XP_003558999
UniProt:
I1HAN7
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All DBs
Position
1:74264798..74273576
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AA seq
630 aa
AA seq
DB search
MAEPSPPPASNPGLRILLAKDRPPTSSPSTLAAVSSHADRDRIIGVFRNALSRTESPEVF
ALQAVQEAIKPQKQTVLVLEENQSLENALRRLLQELVSSAVQSGKGIMQYGNSLDSGESN
CLITHLLDIMLYLCERGHVEGGMVFQLLEDLTDMSTIKDCKDVFGYIESKQDVLGKQELF
GRGKLVMLRTCNQLLRRLSKSNDVVFCGRIIMFLAHFFPLSERSALNIKGVFNTSNETKY
EKDATGGISVDFNFYQTLWSLQEHFRNPALTTTNPTKWQKFASNLTVVLNTFEAQPLCDD
DGKHNNLEQEEDAAFNIKYLTSSKLMGLELKDASFRRHILVQCLIFFDYLKAPGKSDKEG
PSESMKEEIKSCEERVKNLLEMIPPKGKEFLQSIEHILEREKNWVWWKRDGCPAFEKQPF
EKKPGGVRKRKPRWRLGNKELAQLWKWAELNPNALTDPDRVRTPSVTEYWKPLADDMDAS
AGIEEEYHHKNNRVYCWKGLRFSARQDLDGFSRFCEYGIEGVVPTELLPPEVRAKYNSKP
GEKAKRPKREDTKGASAQPKEQQVAATPETDGGGSGADQEEGAVPMDSDNVAIEDGQKQS
PGEVSGPESGQCEPEDDVDDNVKSEPKDSR
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggcggagccctcgccgccgccggcgtccaaccccggcctccgtatcctcctcgccaag
gaccgcccgcccacctcctctccgtccacgctcgcggccgtctccagccacgccgaccgc
gaccgcatcattggagtgttccggaacgcgctgtccaggactgaatccccggaggtgttc
gccctacaagcagttcaggaagcaattaagcctcagaaacaaaccgtgctggttctagag
gagaaccagtccttggagaatgctcttcggagattactgcaggaacttgtgtcttctgca
gttcagtcgggcaaaggaattatgcaatatggaaactcattggacagcggagaaagtaat
tgcctgataacacaccttcttgatatcatgctctacctctgtgaaagagggcatgttgag
ggtggtatggtattccagctgttagaagatctgacggacatgtctactatcaaggactgc
aaagatgtctttgggtatatcgagagcaagcaggatgtcttagggaagcaagagctattt
gggcgtggcaagttggttatgctgaggacctgcaaccaacttctacgaagactttcaaag
tcgaacgatgtggtgttctgcggacgcattatcatgtttctggcacatttcttcccgtta
tcggagcgttcagctctcaacattaagggagtttttaacacatcaaacgaaactaagtat
gaaaaagatgccaccggtggaatttctgttgatttcaacttctaccagaccctgtggagt
ctacaggagcatttcaggaacccagctttgacaactacaaacccaacaaaatggcaaaag
tttgcttctaatttaacggtcgtgttaaacacatttgaagctcagcctctctgcgatgat
gatggaaaacataacaatcttgagcaggaggaagatgctgctttcaatattaagtacctt
actagcagtaaattgatgggtttggagttgaaggatgcaagttttcgacgccacattctt
gttcaatgccttatattttttgactacctcaaggcgcctggaaagagtgacaaagagggt
ccatctgagagcatgaaagaggaaatcaaatcctgtgaagagcgtgttaagaaccttctg
gagatgattccaccaaaagggaaggaatttcttcaaagcatcgagcatattcttgagcgg
gagaaaaactgggtttggtggaagagagatggatgtccagcatttgagaaacaacctttc
gaaaagaagccaggtggagtcagaaaacgtaagccaaggtggagattggggaacaaagaa
cttgcccaactgtggaaatgggcagaactaaaccctaatgctttgactgatcctgaccga
gttcgcactccatcagttacagaatattggaaaccacttgcagatgatatggacgcatca
gctggaattgaggaggagtatcaccacaaaaataaccgtgtttattgctggaaaggttta
cgattttcagcccgacaagatttggacggattttctcgattttgtgaatacgggatcgaa
ggggttgtacctacagaactgttaccaccggaagttcgtgccaaatataattcaaagcct
ggtgaaaaggctaaacgacctaaaagggaagataccaaaggcgcttcagctcaacccaaa
gagcaacaggttgcggccacacctgagacggacggtggcggcagcggggctgaccaggaa
gaaggtgctgtgccaatggattccgataacgtcgcgatagaggatggccagaagcagagc
ccaggcgaagtctccgggcctgaatccgggcagtgcgaacctgaagacgatgttgacgat
aatgtgaaaagcgagcctaaagattctcgataa
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