Brachypodium distachyon (stiff brome): 100844832
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Entry
100844832 CDS
T01717
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100844832
03015 mRNA surveillance pathway
100844832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100844832
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100844832
mRNA cycle factors
P-body specific factors
100844832
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
100844832
NCBI-ProteinID:
XP_010239938
UniProt:
I1IY02
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Position
5:complement(14279211..14286935)
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AA seq
506 aa
AA seq
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MKDPPPRTKVVLRRLPPAIGQQAVVDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNL
KSSEDVVEFAEFFNGHIFVNEKGAQFKALVEYAPSQQVPKSTIKKDARQGTITKDLEYLE
FLELISKPTEHLPSAEIQLERKEAERAAAGKEPPVVTPLMAYIRQQRAAKNMAQRSANSR
LGRKVVGVVTSTSSPKRASERRRASTSTQYVLRDAKEKPTYILVPKREDHSQREKIIAGT
SDATSSRPSGSAQVDSKKDKIVLLKGRARTDSTVSDSSTQHQPVASSRNTLPSGSRQDQR
LEASGRIIKTILSNKEGRHAVASQHEQEGHIINAEKDKRPPRFPNSRSIVKDQTVENAEK
SHYDDKHNHLHGSGPISEKIERHARNRDRPDRGVWAPRRYDKSAPGGGTQASSFDFPLMQ
SHSGDSFSQPQADGHGERKIETRGPGTRTGPIENGNRHANRRGPPRGSKEMEVSAVTADG
KPSKRGSASYGAQERQVWVQKSSSGS
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccgccgccccgcacgaaggtggtgctccggcggctgccgccggcgattgga
cagcaggccgtcgtggaccaggtcgacgcgcgcttcgccgggaggtacgactgggcatgc
ttccgccccggtaatgccagccaaaagaatcatagatattctcgtctctaccttaactta
aagagttcagaagatgttgttgagtttgctgagttcttcaatgggcatatatttgtcaac
gaaaagggtgctcaatttaaagctcttgtcgaatatgcaccatcgcaacaggttccgaag
tcaactatcaagaaagatgctcgtcaagggactattacaaaagatctggaatacttggag
ttccttgagcttatttcaaaacccactgagcatttgccaagtgccgagattcagcttgaa
aggaaagaagctgaaagagcagctgctggaaaggagccacctgttgtgacacctcttatg
gcttatattcgtcagcaaagggcagccaagaatatggctcagaggtctgctaacagtaga
ctaggcagaaaagttgtaggtgttgtaactagcacttctagtcctaaaagagcttccgag
agacgcagggcctccacttcaacgcagtatgttttgcgagacgctaaggagaagccaact
tacatcttagtgccaaaaagagaggatcattcacaaagggagaaaatcattgctggaaca
tcagatgctacaagtagcagaccatctggatctgctcaggttgatagtaaaaaagacaaa
attgtccttttgaaaggaagagccaggactgattccactgtatctgatagctcaactcag
caccagcctgtggcctcttccagaaatacactcccatcaggttctagacaagaccagcga
cttgaggctagtggtagaattattaagactatactttccaacaaggaaggacgccacgct
gttgcatctcaacatgagcaggaaggtcacataattaatgctgagaaggataagcgacca
ccacggtttccaaactcgcgttccattgtgaaagatcagacggttgaaaatgctgagaaa
agccattatgatgacaagcataatcatctgcatggttctggacccattagcgagaagatt
gaaagacatgccagaaatagagataggcctgaccgtggtgtatgggcccctcgtcgttat
gacaagtctgcaccaggaggtggtacacaggcctcatcgttcgacttcccgctaatgcag
tcacattcaggggacagtttctctcagccgcaagcagatggccatggagagaggaaaata
gaaacaaggggtcctggtactcgcaccggccctatagaaaatggaaataggcatgctaac
cgccgtggtcccccgcgtggttcgaaggagatggaagtatctgctgttacagctgacgga
aagccttcaaagaggggctctgccagctatggggctcaggagagacaagtatgggttcaa
aagtcaagttcgggatcataa
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