Bdellovibrio sp. KM01: HW988_18945
Help
Entry
HW988_18945 CDS
T08445
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bdk
Bdellovibrio sp. KM01
Pathway
bdk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HW988_18945 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdk03400
]
HW988_18945 (mfd)
Enzymes [BR:
bdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HW988_18945 (mfd)
DNA repair and recombination proteins [BR:
bdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HW988_18945 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MMtag
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QLY25458
UniProt:
A0A7H9MM36
LinkDB
All DBs
Position
3933963..3937484
Genome browser
AA seq
1173 aa
AA seq
DB search
MKAEMTHTRLESILDRAFETTRGKIQVTGASSPLALAFFLSQTYSKKINGLPHLVVVGSQ
AEALKLQQLLQFFDPLRQSTILPAFDVSAYSGLYPNTRSAADRVRFLAKAQAAKAGEIFI
ASPDALTQKTIPVKILKENSRNLSVGDELPEDIADYLNSLGYVSAPMVEDKGQYALRGGI
VDIFPPSEDTPVRLDLFGDQVGTLRHFSIDDQRSSDEIKSFVLTPAREILFRDETHERLL
QRVRANIDDRPVEKAEADEMLRSLVLKNSFPGIEFLLPYFYGEPANPVDHFPGPVNVWFL
DPVEISRSADENMAELKADYATSSSHVIRPEMDLLFQNFETITYPENSRQIYFSTLEYLD
ADNAAEAHVEYRTSLTQDFSNLSNSNPVGSELWLQAATNKLHKWRDDGYRIFVSTKNQSH
IDRLSLIFEKLELKAVRGGQDEYKWDTWLQEQDADKHLVHIVSRYLSDSLRLDEERVIFL
RDEDFYGKKMRSRESTAAQDFQKQAKRLAFGDLKPGDLVVHVKHGVGIYEGLKIMAIGGV
ESEFIQVGFKDKDKLYLPVYRVGQLQKFSGAGATTVLDKLGGTAWEKTKAKVKSHVRDIA
ADLLALYAKRAEMHRPPFDFKENEIQLFENGFPYEETNDQLRAINDILSDLKSTKPMDRL
VCGDVGFGKTEVAMRAAFFAVQARRQVAILAPTTVLTFQHFETFKKRFEGWPVDIRVLNR
FVTPAETKKTIQDIKDGKVDIIVGTHKLLGSSIGFKDLGLLIIDEEQKFGVTHKEKIKKI
KTSVDTLTLSATPIPRTLNMALVGIRDLSLINTAPVDRLPTRTFVTKFDEETIRKAITAE
ISRGGQVYFIHNRIESIYGLADEIRSIVPEARIKVAHGQMEEHELEKAMLSFFHHEIDVL
ICTAIVESGMDVPRANTMFIDSAHMFGLSQLYQLRGRVGRSKTRAYCYLMMPRNRKLDKE
QQERLKIIQENTALGSGIKIAQYDLELRGSGNILGEEQSGHVNSVGYELYMDLLNEALAE
AKGEKVEDMELDPEINLKIPALIPDAYIKDIRIRLGYYKALAEITSNEDLDRIEEELRDQ
FGPIPDQTLNLMGLMLIRRQCKELGVRDISAGVTSISLVFTEKTKLDPTRVIQLAMREAK
KYSITPDNRLNIKMANISWSAVHEEMERLLSLI
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccgaaatgactcatacaaggctcgaatcgatacttgatcgcgccttcgaaaca
acccgcggaaaaatccaagtgaccggagcttcttctccgctcgcgctcgctttctttttg
tctcagacttactctaaaaaaatcaacggcttgccgcacctggttgtggttggcagtcag
gcagaagcgctgaaattacagcaactcttgcagttctttgacccgcttcgtcagagcaca
attcttccagcattcgacgtttccgcgtactccggtctttatccgaacaccagatctgca
gcggatcgcgtgcgctttctggctaaggctcaagcagcaaaggctggagaaatcttcatc
gcatctcctgacgcgctgactcagaaaactattccggtcaaaattcttaaggaaaactcg
cgaaatttgtcagttggcgatgagttgccagaagacatcgccgattatttgaattctttg
ggatatgtttccgcacccatggttgaagacaagggtcagtatgctttgcgtggaggtatc
gttgatatctttccaccaagtgaagacacacctgtgcgtttggatttgttcggtgatcag
gttggaactcttcgccactttagcatcgatgatcagcgcagttcagatgaaatcaaatct
ttcgttctgacaccggcccgtgaaattttgttccgcgatgaaacccacgaaagactttta
caaagagtgcgcgcgaatatcgatgatcgaccggttgaaaaagctgaagccgatgaaatg
ctgcgctcacttgttttgaaaaactctttcccggggattgagtttttacttccgtatttt
tatggagagcccgcaaatcctgtggatcactttcccggtccggtaaatgtctggttctta
gatccggttgaaatctcccgcagcgccgatgaaaacatggccgaacttaaagcagactat
gcgacaagctcaagccacgtgattcggcctgaaatggatttgctgtttcaaaattttgaa
actatcacctatcccgaaaacagccgtcagatttatttctcaactcttgagtacttggat
gccgacaacgccgccgaagctcatgttgagtatcgcacatctttgactcaggatttttca
aatctttccaattcaaatcccgttggttctgaattgtggctccaggccgcgacgaacaag
cttcataagtggcgagatgacggctaccgcattttcgtcagcaccaagaatcaatcccac
attgatcgtctgtcattgatatttgaaaaactggagctgaaagccgtacgtggtgggcaa
gacgagtataaatgggatacgtggctgcaagaacaagatgcagataagcaccttgttcac
atcgtaagccgctatttatctgacagcttaagacttgatgaagagcgcgtgatctttttg
cgcgatgaagatttttacggcaagaaaatgcgcagtcgtgaatccacggctgctcaagac
ttccaaaagcaggctaagcgcctggcttttggtgatttaaaaccgggtgatctggttgtt
cacgttaaacacggtgttgggatctatgaaggtcttaagatcatggcaattggtggagtg
gaatctgaattcattcaagtcggctttaaagataaagataaactttatctgcctgtttac
cgcgtgggacaattgcaaaaattctccggagctggcgccaccactgttttagataagctg
ggcggaactgcctgggaaaaaaccaaagccaaagttaaatcccatgttcgcgatattgcc
gccgatttgttggctctttatgcgaagcgcgccgagatgcaccgcccaccgtttgatttc
aaagaaaacgaaattcaacttttcgaaaatggttttccttacgaagaaaccaatgatcag
ttgcgtgccatcaacgatatcctgagcgacttaaaatccacgaaacctatggaccgcttg
gtctgcggcgatgttggatttggtaaaacagaagtcgcaatgcgcgcggctttctttgct
gtgcaggctcgtcgccaggtcgcgattcttgcgccgacaaccgttctaacttttcagcac
tttgaaacatttaaaaaacgctttgaaggttggcctgttgatattcgcgttctgaataga
ttcgtgacgccggcagaaactaaaaaaacaattcaagatattaaagacggtaaagtcgat
atcattgtgggaactcacaagcttctgggaagctccattggctttaaggacctggggctt
ttaattatcgatgaagagcaaaagttcggcgttactcacaaagagaaaatcaaaaaaata
aaaaccagcgtcgatactctcactttgtcggcaacaccgattccacgaactttaaatatg
gcactggttgggattcgtgatctaagccttatcaacaccgcaccagtggatcgtctgccg
actcgtacttttgtcaccaagtttgatgaagaaactattcgcaaggcaattaccgcagag
atttctcgcggtggccaggtttactttattcacaatcgtatcgaatccatctatgggttg
gctgacgaaatcagaagcattgtccccgaggcacgtataaaagtcgcccacggtcagatg
gaagagcacgagcttgaaaaagcgatgctttctttcttccatcacgaaattgacgttcta
atttgtacggcaatcgtggaatccggaatggatgtaccacgcgcgaatacaatgttcatt
gattctgctcacatgtttggtttatctcagctttatcaattacgcggtcgcgtgggtcgt
tcgaaaacccgcgcctattgctatttaatgatgccgcgaaatcgtaagctcgataaagaa
cagcaagagcgcttaaagatcattcaggaaaacaccgctctgggcagtggtattaagatc
gcccagtatgatttagaacttcgcggttccggcaatattctgggcgaagaacaatccggc
cacgtaaactccgtcggttatgaactatacatggatcttttgaatgaagccttggcagaa
gctaagggcgaaaaagttgaagacatggagcttgatcctgaaatcaatcttaagatccca
gctttgattcctgatgcctacattaaagatattcgtatccgtttgggatactataaagca
cttgcggaaattacttcgaacgaggatctggatagaattgaagaagaattgcgcgatcaa
ttcggaccgatccctgatcaaaccttgaatctgatgggtttgatgcttattcgtcgtcag
tgtaaagagcttggggttcgcgatatcagcgctggcgttacttcgatttctttggtgttc
acagaaaaaaccaagttagatccaacacgtgtgattcagttggcgatgagggaagcgaaa
aagtattcaattactcccgacaatcgcctgaatattaaaatggcaaatatctcgtggtca
gcagttcacgaggaaatggaaagacttttaagtctgatttag
DBGET
integrated database retrieval system
