Burkholderia dolosa: AK34_5177
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Entry
AK34_5177 CDS
T03793
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bdl
Burkholderia dolosa
Pathway
bdl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bdl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AK34_5177 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdl03400
]
AK34_5177 (ligD)
Enzymes [BR:
bdl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AK34_5177 (ligD)
DNA repair and recombination proteins [BR:
bdl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AK34_5177 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AJY11568
LinkDB
All DBs
Position
3:complement(149676..152420)
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AA seq
914 aa
AA seq
DB search
MADKLDLYRRKRHFDATPEPAGARGRRRTKPDAAPKDRSRAAARGSHPLRFVIQEHHARR
LHYDFRLELDGTLKSWAIPKGPSFDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVV
VWDEGTWTPEGGLAKAREGYRAGKLKFRLDGEKLHGGWALVRSGRQEGRQEQWLLIKERD
DEARSADEFDVVGERPGSVHAGDGRPPDAPLAPQDVEGAVRAPLPERVAPQLATLVDAPP
THGDWRYEVKFDGYRMLARVSGKGARRRVTLMTREGRDWTPKLRAQRDALAALDVDDAWF
DGEAVVLRENGLPDFQALQNALGAGRSDEITLFVFDLPYLNGYDLRDAPLTARRALLEPL
LADSDPARLRYSPDLGDDVVSLISSACDTGLEGLIGKRADARYRAGRSPAWIKLKCRRRQ
EFVIGGYTEPSGSRHGLGALLLGVHEPAPDGKRRRGPGPLRYVGRVGTGFDSRMLDRLAA
RLRKHERDTAPFDPAPNEWSRTPVHWVEPTLVAECEFAEWTGDGIVRQAAFIALRDDKPA
SQIVREVPRHTETETTMDDRHTEQDKPARHARSAPRGHASNGDARGSHSRASARGTASTR
GTSGTSGSGTSGTKAGSGPDQVGRVRITHPERVIDPQHGTRKIDLAHYWQWVAPWLLPDL
KGRPVSLVRAPGNIEGELFFQKHADRREIPFVTRHEGLDPGHGALLSIDSVDALLGVAQM
GTIELHTWNAHVSNIERPDRIVFDLDPDPALPWSTMIEAAQLVRGLLDELGLVSFCKTSG
GKGLHVVVPLTRHAGWDDMKDFSRAVAQHVAGALPDRFTATMGPRHRRGKIFIDYLRNGR
GASTIAAYSVRARPGMGVSVPIGWDEVPGTTGGAQWTIDTLHERLDRLERDPWEAYAQTR
QRVTAKMRARLGMS
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaactcgatctgtatcgccgcaagcgtcacttcgacgcgaccccggaaccg
gccggcgcgcgcgggcgccggcgcacgaagccggatgccgcgccgaaggaccgcagccgc
gcggccgcccgcggcagtcatccgctgcgcttcgtcatacaggagcaccacgcgcgacgc
ctgcattacgacttccggctcgaactggacggcacgctgaagtcgtgggccataccgaag
gggccgagcttcgatccgtcggtgaaacggctcgcggtgcacgtcgaggatcatccgctc
gaatacgcgtcgttcgaaggcgagattccggccgggcactacggcgccggctcggtcgtc
gtgtgggacgaaggcacgtggacgcccgagggcggactcgcgaaagcgcgcgaaggctac
cgcgcgggcaagctgaagttccggctcgacggcgagaagctgcacggcggctgggcgctc
gtgcgcagcggccggcaggaagggcggcaggagcagtggctgctgatcaaggagcgcgac
gacgaagcacgcagcgcggacgagttcgacgtggtcggcgagcggccgggcagcgtgcac
gccggagacggccggccgcccgacgcgccgcttgcgccgcaggacgtcgaaggcgcggtg
cgtgcgccgctgccggaacgcgtcgcgccgcagctcgcgacgctcgtcgatgcgccgccg
acgcacggcgactggcgctacgaggtcaagttcgacggctaccggatgctcgcgcgcgtg
tcgggcaagggcgcacggcggcgcgtgacgctgatgacgcgcgaaggccgcgactggacg
cccaagctgcgcgcgcagcgcgacgcgctcgcggcgctcgacgtcgacgacgcgtggttc
gacggcgaggcggtcgtgctgcgcgagaacgggctgcccgatttccaggcgctgcagaac
gcgctcggcgcgggccgctcggacgagatcacgctgttcgtgttcgacctgccctatctg
aacggctatgacctgcgcgacgcgccgctgaccgcgcgccgcgctttgctcgaaccgctg
ctggccgacagcgacccggcgcggctgcgctattcgcccgatctcggcgacgacgtcgtg
tcgctgatctcgagcgcatgcgacacagggctcgaaggactgatcggcaagcgcgccgat
gcgcgctatcgggccggacgctcgcccgcgtggatcaagctgaaatgccgccgccggcag
gagttcgtgatcggcggctacacggagccttccggcagccggcacggtctcggcgcgctg
ctgctcggcgtgcacgagccggcgccggacggcaagcggcggcgcgggcccggcccgctg
cgctacgtcggccgcgtcggcaccggcttcgactcgcggatgctcgaccggctcgcggcg
cgcctgcgcaagcacgagcgcgacaccgcgccgttcgatccggcgccgaacgaatggtcg
cgcacgcccgtgcactgggtcgagccgacgctcgtcgccgaatgcgaattcgcggaatgg
accggcgacggcatcgtgcggcaggcggcgttcatcgcgctgcgcgacgacaagccggcg
tcgcagatcgttcgcgaggtgccgcgccacaccgaaacggagacgacgatggacgaccgc
cacacggaacaggacaagccggcccggcacgcgcgcagcgcgccgcgcgggcatgcatcg
aacggcgacgcgcgcggctcgcattcgcgcgcgtcggcacgcggcacggcgagcacacgc
ggtacgagcggcacgagcggcagcggcacgagcggcacgaaggccggttccggcccggac
caggtcggccgcgtgcgcatcacgcaccccgagcgcgtcatcgatccgcagcacggcacg
cgcaagatcgatctcgcgcattactggcaatgggtcgcgccgtggctgctgccggacctg
aaggggcggccggtgtcgctcgtgcgcgcgcccggcaatatcgaaggcgagctgttcttc
cagaagcatgcggaccgtcgcgagattccgttcgtcacgcggcacgaaggcctcgatccc
ggccacggcgcgctgctgtcgatcgacagcgtcgatgcgctgctcggcgtcgcgcagatg
gggacgatcgagcttcatacgtggaatgcgcacgtatcgaacatcgagcggccggaccgc
atcgtgttcgacctcgatcccgatccggcgctgccgtggtcgacgatgatcgaagccgcg
cagctggtgcgcgggctgctcgacgagctcggcctcgtgtcgttctgcaagacgagcggc
ggcaaggggctgcacgtggtcgtgccgctcacgcggcatgcgggctgggacgacatgaag
gatttctcgcgcgcggtcgcgcagcacgtcgcgggcgcgctgcccgaccgcttcaccgcg
acgatggggccgcgccaccggcgcggcaagatcttcatcgactatctgcgcaacggacgc
ggcgcgagcacgatcgccgcatattcggtgcgcgcgcggcccgggatgggcgtgtcggtg
ccgatcggctgggacgaggtgcccggcacgaccggcggtgcgcaatggacgatcgacacg
ctgcacgaacggctggaccggctcgagcgcgatccgtgggaagcgtatgcgcaaacgcgc
cagcgcgtgaccgcgaagatgcgcgcgcggctcgggatgtcgtga
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