Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_0829
Help
Entry
BBDE_0829 CDS
T04222
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bdn
Bifidobacterium dentium JCM 1195 = DSM 20436
Pathway
bdn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBDE_0829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdn03400
]
BBDE_0829
Enzymes [BR:
bdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBDE_0829
DNA repair and recombination proteins [BR:
bdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBDE_0829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAQ26823
LinkDB
All DBs
Position
991204..994725
Genome browser
AA seq
1173 aa
AA seq
DB search
MAAELSGILDVLETDDDFRALISGEVEEPESDIDPSITVGVPEGLRPALAAGAAGSRPVV
LVVASGREAEETVEAIRSWYGGDPQDVAQLEAWETLPHERLSPRADTVASRMAVFRRLKH
PEEGNAMFGPIRILVMPVRSLIQPVVAGLGDIEPLVFTQGEELALDEASKRLVESAYTRV
DLVMDRGEFAVRGGIIDVFPPTLPHPVRIEFFGDEIDAIKQFHASDQRTYGEPLESVWAT
PCRELQLTDAVRDRAKSLIGSIPNAEDMLESIANAIAVEGMESLLPALVDDMESVQGMLP
PNALIMLSDPEKLRRGADDLAKTANEFLAASWHVAASGHGSGAPITFDQANFLDFEETIT
SLAFSQHDVWKLTSFGVDSSLPGHVRIDASNPGEYRGDEHKAASGIEGLLAAGYDVTITA
AAQGTLARLKRAINETGITNFECVRSRAIDGFVDNAAKTALLTERDLTGRTSAAGQAKTP
KRRRKAIDLMELKSGDYVVHEQHGIGRFVEMRQRTIGTGANKTTREYLVIEYAPNKRGAP
ADKLFIPTDQLDQISKYIGAEAPKLNKLGGSDWAATKAKARKHVHEIAEDLVKLYSARQR
TPGYAFGKDTPWQKELEDAFPYQETADQLTTIDEVKSDMERSVPMDRLICGDVGFGKTEI
AVRAAFKAVQDSKQVAVLVPTTLLVQQHFETFTERYEGFPVNVAAMSRFQTAKEINDTIT
GLEDGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSAT
PIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQITAAVRRELLRGGQVFYVHN
RVQDIASVAAKIHDLVPEAHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDI
SNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPAKPMTQQSHDRLATIAQNT
ALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEQYKEPERTESVAV
SIDLPIEASIPVDYIDSDKLRLEAYRKLAAARTEGDLEELRDELADRYGRPPAEFGALFD
VARLRAKARRLGITEIIAQGRNVRVAKFEPRESVQLRMARIYKGIQYRPVTKTYLVPAPF
AGSLGSKPMGSDEVVQWTDQLLDDLDWSPTPRK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgagctgtccggcatccttgacgtactggaaacggatgacgatttccgtgcg
ctgatttccggtgaggtcgaggaaccggaatccgacatcgatcccagcatcaccgtaggc
gttcccgaaggtctacggccggctctggcggccggtgccgccggcagcaggccggtcgtg
ctcgttgtcgcttccgggagggaggcggaggagacggtcgaggcgattcgttcctggtac
ggtggcgacccgcaggatgtggcccagttggaggcttgggaaacgttgcctcatgaacgt
ctgtctccccgtgccgatacggtggccagccgcatggcggtgttccgcaggttgaaacac
cccgaagaggggaatgccatgttcggtccgatccgcattctggtaatgccggtgcgatcc
ctgattcagccggtagtggccggtcttggcgacatcgaaccgctggtattcacgcaaggc
gaggaattggcgctcgatgaagcgtcgaaacgattggtggagagcgcctatacgcgtgtg
gaccttgtgatggaccgtggagaattcgccgtgcgtggaggcatcatcgacgtatttccg
ccgacgctgccgcatccggtgcgtatcgaattctttggtgacgaaatcgatgccatcaag
cagttccatgcttccgaccaacgtacgtacggagagccgctggagagcgtctgggccacg
ccatgccgtgaattgcaactgacggacgccgttcgcgatcgggcgaagtccctgatcggt
tccattcccaacgccgaggatatgctggaatccatcgccaacgccattgcggtagagggt
atggaatcgctgttgccggcgctcgtcgacgacatggaatcggtgcagggcatgttgccg
ccgaatgcgctgatcatgctttccgatccggaaaaactgcgcagaggcgccgatgatctg
gccaaaaccgccaacgagtttctggctgccagctggcatgtggccgcgtccggtcatggt
agtggtgcgcccatcaccttcgatcaggcgaattttcttgacttcgaagagaccataacg
tctcttgcgttctcgcagcatgacgtttggaaactcaccagtttcggtgtggattccagt
ctgcccggccatgtacgaatcgatgcttcgaatccaggcgaatatcgtggtgacgaacac
aaggccgcctccggcattgaggggctgctcgcagctggctatgacgtgaccatcacggca
gccgcacaaggcacgttggcccgcctgaaacgcgccatcaacgaaaccggcatcaccaac
ttcgagtgcgtgcgatcccgtgccatcgacggattcgtggataatgcggcgaaaacagca
ttgctgaccgagcgtgacctgaccggccgcacttcggctgcgggccaggccaaaaccccg
aagcgccggcgcaaggccatcgatctgatggaactgaaatccggcgattacgtggtgcac
gagcagcacggcatcggacgtttcgttgaaatgcgtcaacgtactatcggtaccggcgcc
aacaaaaccacccgcgaatatctggtcatcgaatatgcgccgaacaaacgcggcgccccg
gccgacaaactgttcatccccaccgaccagctcgatcagatcagcaagtatatcggcgcc
gaggcgccgaaactcaacaaactgggcggttccgattgggcggccaccaaagccaaggca
cgtaaacacgtgcacgagatcgccgaggatctggtcaaactgtactcggcccgccagcgt
acgcccggttacgccttcggcaaagacacgccatggcaaaaggaactggaggatgccttc
ccgtatcaggagaccgccgaccagctcaccaccatcgacgaggtcaaatccgacatggaa
cgatccgtaccgatggatcgtctcatctgcggcgacgtcggtttcggcaagacggagatc
gccgtacgtgccgctttcaaggcggtgcaggattccaaacaggtggccgtgctcgtaccg
accacgctgctggtgcaacagcatttcgagacgttcaccgagcgctatgagggcttcccg
gtgaatgtggccgcaatgagccgattccagaccgccaaggaaatcaacgacaccattacg
ggtctggaggacggcaccgtcgacgtggtgatcggcacgcataagctgctcaatccgaaa
atcaaattcaaggatctgggactcgtcatcatcgacgaggagcaacggttcggcgtcgag
cataaggagacgctcaaggcgttgcgtaccaatgtggacgtgctgagtctgtcggcaacg
cctattccacgaacgcttgagatggccgtcaccggcatccgtgagatgtccacactggcc
acgcctcccgaggatcgtctgccggtgctcacctatgtcggcgcatatgaggatgcgcag
atcaccgcagccgtacgtcgagaactgctacgtggtggccaggtcttctacgtgcacaat
cgtgtgcaggacattgcgtccgtcgcggcgaagattcatgacctcgtgccggaagcgcat
gtcggcattgcgcacggcaagatgggggagaagcagctcgatggcgtgatccgtgacttc
tggcatcgtgacatcgatgtgctggtatgtaccacgattatcgagactggtcttgatatc
tccaacgcaaacacgttgatcgtcgatcatgccgatcgtttcggtctcagtcagctgcac
cagctgcgaggacgagtcggacgcggccgtgaacgcgcctacgcctacttcctttatgat
ccggccaagccgatgacccagcagtcgcatgaccgtcttgccaccatcgcgcagaacacg
gcgctcggttccggtttcgacgtggccatgaaggatctggagttgcgtggcaccggtaat
ctgcttggcgatgagcagagcgggcatatcgagggtgtgggtttcgacctgtatgtgcgc
atggtctccgaggccgtggaacagtacaaggagccggaacgcaccgaatcggtggccgtg
agcatcgacctgccgatcgaggcgtccattccggtcgactatatcgattccgacaagcta
cggcttgaagcctatcgcaagctggccgcggcccgtacggaaggcgatctcgaggaactg
cgtgacgagcttgccgaccgttatggcaggccgccggccgaattcggcgcattgttcgac
gtggctcgattgcgggccaaggcgcgaaggcttggcatcaccgagatcatcgcacagggc
cgtaatgtgcgtgtggccaagttcgagccgcgtgaatccgtgcagcttcgcatggccagg
atctacaagggcatccagtacagaccggtcaccaagacgtatctggttcccgcccccttt
gcaggttcgctcgggtcgaagccgatgggctccgacgaggtggtgcagtggacggatcaa
ctgttggacgacctcgattggtctcccacccctcgcaagtga
DBGET
integrated database retrieval system
