Phocaeicola dorei HS1_L_1_B_010: EL88_21275
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Entry
EL88_21275 CDS
T03262
Name
(GenBank) RNA polymerase
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
bdo
Phocaeicola dorei HS1_L_1_B_010
Pathway
bdo02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
bdo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EL88_21275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdo03021
]
EL88_21275
Transcription machinery [BR:
bdo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EL88_21275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
GerE
Sigma70_ECF
HTH_24
HTH_10
HTH_23
HTH_11
HTH_40
UPF0122
HTH_16
HTH_38
HTH_20
HTH_Tnp_ISL3
HTH_17
DUF3514
DUF6362
MarR_2
HTH_Mga
Dimerisation2-like_dom
HTH_29
HTH_AsnC-type
LexA_DNA_bind
HTH_36
DUF848
L-fibroin
Motif
Other DBs
NCBI-ProteinID:
AII65531
LinkDB
All DBs
Position
complement(4787883..4788485)
Genome browser
AA seq
200 aa
AA seq
DB search
MKLPLDIERELIRKLINGDKIAFSHLFSFYKSQVLYYCVHFVKDKEIAEDITQDIFLTVW
EKKEDIRIEQSFSAFLYTIARNRIYDIFRSLSARSVLYEKLMEQAVDYVDDVEKSLEEKN
IQELIAQALEQLSPRQREIFELSRNRGLSHKEIAEQLGLSVYTVQDHIKNALEKIRAYLI
PFISSCPILVSLIILKYVKP
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcctcttgacatagagcgggaattaattcggaaacttataaatggagacaag
attgctttcagccatcttttctctttttataagtcccaggtcctttattattgtgtccat
tttgtcaaggataaagagatagctgaggatataacacaagatatttttttgaccgtttgg
gaaaagaaggaagatattcggattgagcagtctttttccgcttttctttatactatagca
agaaatcgtatttacgatatatttcgttctctgtctgcccgatctgtgctatacgaaaaa
ctgatggaacaggccgttgattatgtagatgatgtagagaagagtctggaagaaaagaat
attcaggaattgattgcacaggctttggaacagttgagtccgcgccaacgggagattttc
gaattgagccggaatagaggactgtctcataaagaaatagctgaacaacttggtttgtct
gtttataccgtgcaagatcatataaaaaatgcattagaaaaaattcgtgcttatctgatc
cctttcataagttcctgtccaatacttgtaagcctaatcatattaaaatacgttaaacca
taa
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