Bdellovibrio sp. qaytius: CIK05_04350
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Entry
CIK05_04350 CDS
T05880
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bdq
Bdellovibrio sp. qaytius
Pathway
bdq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bdq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CIK05_04350 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdq03400
]
CIK05_04350 (ligD)
Enzymes [BR:
bdq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CIK05_04350 (ligD)
DNA repair and recombination proteins [BR:
bdq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CIK05_04350 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AZZ36052
UniProt:
A0A3T0RPF9
LinkDB
All DBs
Position
complement(900345..902783)
Genome browser
AA seq
812 aa
AA seq
DB search
MGLQEYRQKRDFKKTLEPRGRKISTKGQHIFVIQKHAASHLHYDLRLELDGVLKSWAIPK
GPSLNPNDKRLAVEVEDHPMDYAYFEGSIPLGEYGGGDVIVWDRGVWIPPKGALKALEKG
HLEFELRGEKLSGKFMLVRTRRMGSSKKSQWLLIKRHDQFVDEDHDILKKDKSVITGLSL
TNLERIKKKTKLIRSKLPAFIEPQLALLAETPPQGDNWIHEIKLDGYRTFCHKQKSNIKL
LTRSGLDWTSKYKFIEHECKKIKADSAMLDGEIVWTDNNGVSHFQGLQNSLENHHSDELF
YYVFDLLHLNGVDLRDTPLLQRKMLLKKLLVESGSKKILFSDFIKGDGKNVLKSACHLNL
EGIVSKDGKSTYQSGRNKNWIKSKCIKLQEFVIGGYTFQNKNKSLGSLLMGAYNAQGEFQ
YLGRVGTGFNSSESTKLLEKLRKLKSEKSFFTKGSPTSTAQDLRRELSFVKPNLVAQIEF
GAWTDEKILRHASFKGLRLDKKAKSVTIEEPALKKTTELSDIKLTNPDKVLFPKAKLTKK
QLYDYYKTIHKWMMPYVDHRPLSLLRGPNGVGKTCFFQKHAETNNVGLKAKKLTSGLKNK
TEEVLYVDSLKGILEMVQMATLEIHSRGCHIHNIDQPDLIVFDLDPAPNVTFAKVKEAAL
ALKDLLDRLKLKSFALVSGGKGLHLHVPIEAKYNFDEVKHFAKIVCEQLVNENPESFTTD
ISKAKRSKKIFLDYLRNGFGATAITPYSVRAQTEATVAFPITWPQLKKVTSAKEFTVDKV
LKILKKSKDPWTGYFRLKQKLALLDKLNSQLH
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgggtttacaagaataccgccagaagcgcgactttaaaaaaactcttgagccgcgtgga
cgaaaaatttctacaaagggccaacatatttttgtcatacaaaaacatgcagcctcgcat
ctgcattatgatttgcgtttagagttagatggcgttttaaaaagctgggccatacccaaa
ggcccatcattaaacccaaacgataaacgattggccgtcgaagtcgaagaccacccaatg
gattacgcttattttgaaggaagtatccctttaggtgaatacggtggtggcgatgtgatt
gtgtgggatcgtggggtgtggattccacctaaaggtgcactgaaggctcttgaaaaaggg
caccttgaatttgaactacgtggagaaaaactatctggtaaatttatgctggtacgaact
cggcgcatgggttcatccaaaaaaagtcagtggcttttaattaaacgccatgatcaattt
gtcgatgaagatcatgatattttaaaaaaagataaaagcgtgatcaccggtttaagctta
acaaatcttgagcgaataaagaaaaaaacaaaactcatcagatcaaaactccccgccttt
atcgaaccgcagttagccttgctggcagaaactcccccgcagggtgacaactggattcat
gaaattaaacttgatggctatagaacattttgccataagcaaaaatctaatattaaactt
ttaactcgctcgggccttgattggaccagcaaatataaatttattgaacacgaatgtaaa
aaaataaaggctgactccgcgatgcttgacggagaaattgtatggactgataacaacgga
gtcagccactttcaaggtttgcaaaattcattagaaaaccatcatagcgatgaattattt
tattatgtttttgatctgctgcatttaaacggagtcgatctgcgcgatacgccgcttttg
caaagaaaaatgctgcttaaaaaacttttagtagaaagtggttcaaaaaaaattctcttc
agtgattttataaaaggtgatggcaaaaatgttcttaaatcggcgtgtcacttaaaccta
gaaggcattgtttcaaaagacggtaaaagcacctaccaatcaggtcgcaataaaaactgg
attaaaagtaaatgcatcaaattacaagaatttgtcattggcggatacacttttcaaaat
aaaaataaatccttaggatcactcttaatgggagcctacaacgcccaaggcgagtttcag
tatctaggacgcgtaggaactggttttaattcaagcgaaagcacaaaacttttagaaaag
ttaagaaaactaaaatcagaaaaaagttttttcactaaaggctcacctacaagtaccgca
caagatcttagacgtgaattaagttttgtaaaaccaaacttagtcgcacaaattgaattc
ggtgcctggacagatgaaaaaatattaagacatgcgtcctttaaaggattacgtttagat
aaaaaagcaaaatctgtaaccatcgaagaaccagctcttaaaaaaacaaccgagctttct
gatattaaacttacaaaccctgataaggtgttatttccaaaagcgaagcttacaaaaaaa
cagctctacgattattataaaactattcataaatggatgatgccttatgttgatcaccgt
ccgctatcgcttttacgcggcccaaatggcgtcggtaaaacctgcttctttcaaaaacac
gccgaaaccaataacgtaggtcttaaagccaaaaaactaacttcgggtttaaaaaataaa
actgaagaagttttatatgttgattcacttaaaggaattttagaaatggtgcaaatggca
acccttgagattcattcacgtggttgtcacattcacaacatcgatcaacctgatttaatc
gtgtttgatttagacccagcccccaacgtgacttttgcaaaagttaaagaagcagcattg
gctttaaaagatctgctcgatcgattaaaattaaaaagttttgcgcttgtgagcggaggc
aaaggtttacatcttcatgtgcctatcgaagctaaatataatttcgatgaagtaaaacat
tttgcaaaaatagtttgtgaacaactggtgaatgaaaatccagaaagttttacgactgac
atttcaaaagcaaaaagaagtaaaaaaatattcttagattatttgcgaaatggttttggc
gctactgcgattacaccgtattcagtcagagcacaaacagaagccacagtggcttttcca
atcacctggccacagttaaaaaaagtgacctcagccaaagaatttactgtagataaagtt
ttaaaaattctaaagaaatctaaagacccatggaccgggtactttagattaaaacaaaaa
ttagcattgcttgataaactaaatagtcagctgcactga
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