Bdellovibrio sp. ZAP7: DOM22_04265
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Entry
DOM22_04265 CDS
T06441
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bdz
Bdellovibrio sp. ZAP7
Pathway
bdz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bdz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DOM22_04265 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdz03400
]
DOM22_04265 (ligD)
Enzymes [BR:
bdz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DOM22_04265 (ligD)
DNA repair and recombination proteins [BR:
bdz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DOM22_04265 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QDK44426
UniProt:
A0A514XFF5
LinkDB
All DBs
Position
complement(847371..849806)
Genome browser
AA seq
811 aa
AA seq
DB search
MSLVKYNQKRDFKITKEPPGKLKKSGKGALSFVVQEHHASHLHWDFRLEWEGVLKSWAVP
KGPSMDPHIKRLAVETEDHPLSYGSFHGTIPEDQYGGGEVYIWDKGTWEPEEDAAKGFKK
GHLVFSLKGKKLKGVFHLVRTRTPGRTSQWLLMKKNDAFAEAVPEIKPVAEAKHTPRRAV
AKKVVKKKVSRKSAKVAKLPFVTPELALLVDEPPEGKEWLHELKFDGYRVQAHVNGDEVK
LFTRSGQDWTAKFPVIARDLQKLDVEGAVIDGEIVILDKSGRSDFQLLQNALKSNQAQNM
YLYAFDLLAVNGKDLRTRPLEQRRDELVKIFKKSAGRIRYSEEYQGTGKSLLAQAKKHGL
EGIISKKRNSPYRSERNSNWLKIKCSEQQEFVIGGYTLGKGSRDHFGALLLGVYKKDKLQ
YVGKVGTGFTQQSLRDVFKTLKPLETQQSPFDIKSPKGRDIHWLKPKYSAQITFSNWTHE
EILRVPVFNGLREDKPTKQIKKETPVALKSSEEWPISSPDKILFAKEKITKRQVANFYTK
VAEHILPLITDRPLSLVRCPNGTGKQCFFQKHQAKIPESMTPVKMKEHGGYGTYMSVHDD
AGLAALVQMNAFEIHCSNSRHPETDVPDQFVMDFDPGPGVGWKTVVDAAFNLKKLLEGLG
LKSFVKLSGGKGVHVHVPVAPIYTFDQINSFTHALALQMEQQDPDLFVSKMSKKIREGRI
FVDYLRNSQGATAVAPYSLRARAISAVAMPVTWNDLKKIPGGDYYDLKKALAHLQRRRSD
PWQGYLKLQQRIALLEKATTKKSSTRSQAHL
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgagtttagtgaaatacaatcaaaagcgcgatttcaaaataaccaaagagcctcctggc
aagcttaagaagtccggcaagggagctctttcgttcgttgttcaggaacatcacgcgagc
catcttcactgggactttcgcttggaatgggagggcgtcttaaaaagttgggctgttccg
aaaggtcccagcatggaccctcacataaaacgcctggctgttgaaaccgaagaccatccc
ctctcctatggatcatttcatggcactattccagaagatcaatacgggggcggtgaagtt
tatatttgggacaaaggaacttgggagccagaagaagacgctgccaaggggtttaaaaaa
ggccatctcgtattttccctgaaaggaaaaaaactgaaaggcgtatttcacttagttcga
acccgcaccccaggtcgtaccagccaatggctcttaatgaaaaagaatgacgcttttgcc
gaagctgttcccgaaatcaagcccgtggctgaggccaaacacactccacgccgtgccgtt
gctaaaaaagtggttaaaaaaaaagtctccagaaaatcggcaaaggtcgcaaagcttccc
ttcgtgactccggagctagctctgctggtcgacgagcctcctgaaggcaaagagtggctg
catgaattaaaattcgacggctatcgtgtccaagcgcacgtaaacggagacgaagtcaaa
ctcttcactcgctcaggacaagattggacggcgaaatttccggtgattgcaagagatctg
caaaaacttgatgtcgaaggtgccgtcatcgacggtgaaattgtgatccttgataaatcc
ggtcgcagcgatttccaacttttacagaatgccctgaaaagcaaccaggctcagaatatg
tatctttatgcctttgatctgttagccgtcaatggaaaggatctgcgcacacgacctctg
gaacaacgtcgcgatgagctagtaaaaatatttaaaaaatctgcgggccgcattcgctat
agcgaagaataccaggggaccgggaaaagtcttttagcccaggcaaaaaaacacgggctg
gaaggaattatctccaaaaaacgaaacagtccttatcgatccgaacgaaattccaattgg
cttaaaataaaatgcagcgaacaacaggagttcgttatcggcggctatactttaggaaaa
ggcagccgtgatcactttggtgctctccttctgggagtttacaaaaaagataaactgcaa
tatgtcggtaaagtcggtacaggttttacgcaacaatctttacgagatgtctttaaaact
ttgaagcccttggaaacccaacaatccccttttgatattaaatcccctaaaggtcgcgat
atccactggttaaaacccaaatacagtgcccagatcactttttccaattggactcatgaa
gaaatcctgcgcgtccccgtttttaatggactgcgggaggacaaacctacgaaacaaatt
aaaaaggagacgccagtggcccttaaatccagtgaagaatggcctatctctagtcctgac
aaaattctattcgccaaagaaaaaatcactaagcgtcaggttgcaaacttttataccaaa
gtagctgaacatattttacctcttatcacggaccgtccgctgtcattagtgcgctgcccg
aatggcactggcaaacagtgcttctttcaaaaacaccaagccaagatcccagaatccatg
acccctgttaaaatgaaagagcacggaggttatggtacctacatgagtgttcatgatgat
gcggggcttgcggcactggtgcaaatgaacgcctttgaaattcattgttccaactcccgc
catcctgaaaccgatgttcccgatcaatttgtcatggatttcgatcctgggcccggagtc
ggctggaaaacggtcgtggatgctgctttcaatctaaaaaagctcttggaaggactcggt
ttaaaaagcttcgtcaaacttagcggaggaaaaggtgttcacgtccacgttcccgtggct
ccgatctatacatttgatcaaatcaatagttttacccacgcgttagctttgcagatggaa
caacaagatccggatcttttcgtttcaaagatgtctaaaaaaattcgcgaaggtcgaatc
tttgtcgattaccttagaaactctcaaggagccacggctgttgcgccatattcacttcgc
gctcgagcgatcagtgctgtagccatgcctgtgacgtggaatgatctaaaaaagattccc
ggcggagattactatgatttgaaaaaagccctagctcaccttcaacggcggcgcagtgat
ccatggcaaggttatttaaaacttcaacaacgaattgcactcttggaaaaagcgaccact
aaaaaaagctctaccaggtctcaagcgcatttatga
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