KEGG   Bdellovibrio sp. ZAP7: DOM22_04265
Entry
DOM22_04265       CDS       T06441                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bdz  Bdellovibrio sp. ZAP7
Pathway
bdz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bdz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DOM22_04265 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bdz03400]
    DOM22_04265 (ligD)
Enzymes [BR:bdz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DOM22_04265 (ligD)
DNA repair and recombination proteins [BR:bdz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DOM22_04265 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QDK44426
UniProt: A0A514XFF5
LinkDB
Position
complement(847371..849806)
AA seq 811 aa
MSLVKYNQKRDFKITKEPPGKLKKSGKGALSFVVQEHHASHLHWDFRLEWEGVLKSWAVP
KGPSMDPHIKRLAVETEDHPLSYGSFHGTIPEDQYGGGEVYIWDKGTWEPEEDAAKGFKK
GHLVFSLKGKKLKGVFHLVRTRTPGRTSQWLLMKKNDAFAEAVPEIKPVAEAKHTPRRAV
AKKVVKKKVSRKSAKVAKLPFVTPELALLVDEPPEGKEWLHELKFDGYRVQAHVNGDEVK
LFTRSGQDWTAKFPVIARDLQKLDVEGAVIDGEIVILDKSGRSDFQLLQNALKSNQAQNM
YLYAFDLLAVNGKDLRTRPLEQRRDELVKIFKKSAGRIRYSEEYQGTGKSLLAQAKKHGL
EGIISKKRNSPYRSERNSNWLKIKCSEQQEFVIGGYTLGKGSRDHFGALLLGVYKKDKLQ
YVGKVGTGFTQQSLRDVFKTLKPLETQQSPFDIKSPKGRDIHWLKPKYSAQITFSNWTHE
EILRVPVFNGLREDKPTKQIKKETPVALKSSEEWPISSPDKILFAKEKITKRQVANFYTK
VAEHILPLITDRPLSLVRCPNGTGKQCFFQKHQAKIPESMTPVKMKEHGGYGTYMSVHDD
AGLAALVQMNAFEIHCSNSRHPETDVPDQFVMDFDPGPGVGWKTVVDAAFNLKKLLEGLG
LKSFVKLSGGKGVHVHVPVAPIYTFDQINSFTHALALQMEQQDPDLFVSKMSKKIREGRI
FVDYLRNSQGATAVAPYSLRARAISAVAMPVTWNDLKKIPGGDYYDLKKALAHLQRRRSD
PWQGYLKLQQRIALLEKATTKKSSTRSQAHL
NT seq 2436 nt   +upstreamnt  +downstreamnt
atgagtttagtgaaatacaatcaaaagcgcgatttcaaaataaccaaagagcctcctggc
aagcttaagaagtccggcaagggagctctttcgttcgttgttcaggaacatcacgcgagc
catcttcactgggactttcgcttggaatgggagggcgtcttaaaaagttgggctgttccg
aaaggtcccagcatggaccctcacataaaacgcctggctgttgaaaccgaagaccatccc
ctctcctatggatcatttcatggcactattccagaagatcaatacgggggcggtgaagtt
tatatttgggacaaaggaacttgggagccagaagaagacgctgccaaggggtttaaaaaa
ggccatctcgtattttccctgaaaggaaaaaaactgaaaggcgtatttcacttagttcga
acccgcaccccaggtcgtaccagccaatggctcttaatgaaaaagaatgacgcttttgcc
gaagctgttcccgaaatcaagcccgtggctgaggccaaacacactccacgccgtgccgtt
gctaaaaaagtggttaaaaaaaaagtctccagaaaatcggcaaaggtcgcaaagcttccc
ttcgtgactccggagctagctctgctggtcgacgagcctcctgaaggcaaagagtggctg
catgaattaaaattcgacggctatcgtgtccaagcgcacgtaaacggagacgaagtcaaa
ctcttcactcgctcaggacaagattggacggcgaaatttccggtgattgcaagagatctg
caaaaacttgatgtcgaaggtgccgtcatcgacggtgaaattgtgatccttgataaatcc
ggtcgcagcgatttccaacttttacagaatgccctgaaaagcaaccaggctcagaatatg
tatctttatgcctttgatctgttagccgtcaatggaaaggatctgcgcacacgacctctg
gaacaacgtcgcgatgagctagtaaaaatatttaaaaaatctgcgggccgcattcgctat
agcgaagaataccaggggaccgggaaaagtcttttagcccaggcaaaaaaacacgggctg
gaaggaattatctccaaaaaacgaaacagtccttatcgatccgaacgaaattccaattgg
cttaaaataaaatgcagcgaacaacaggagttcgttatcggcggctatactttaggaaaa
ggcagccgtgatcactttggtgctctccttctgggagtttacaaaaaagataaactgcaa
tatgtcggtaaagtcggtacaggttttacgcaacaatctttacgagatgtctttaaaact
ttgaagcccttggaaacccaacaatccccttttgatattaaatcccctaaaggtcgcgat
atccactggttaaaacccaaatacagtgcccagatcactttttccaattggactcatgaa
gaaatcctgcgcgtccccgtttttaatggactgcgggaggacaaacctacgaaacaaatt
aaaaaggagacgccagtggcccttaaatccagtgaagaatggcctatctctagtcctgac
aaaattctattcgccaaagaaaaaatcactaagcgtcaggttgcaaacttttataccaaa
gtagctgaacatattttacctcttatcacggaccgtccgctgtcattagtgcgctgcccg
aatggcactggcaaacagtgcttctttcaaaaacaccaagccaagatcccagaatccatg
acccctgttaaaatgaaagagcacggaggttatggtacctacatgagtgttcatgatgat
gcggggcttgcggcactggtgcaaatgaacgcctttgaaattcattgttccaactcccgc
catcctgaaaccgatgttcccgatcaatttgtcatggatttcgatcctgggcccggagtc
ggctggaaaacggtcgtggatgctgctttcaatctaaaaaagctcttggaaggactcggt
ttaaaaagcttcgtcaaacttagcggaggaaaaggtgttcacgtccacgttcccgtggct
ccgatctatacatttgatcaaatcaatagttttacccacgcgttagctttgcagatggaa
caacaagatccggatcttttcgtttcaaagatgtctaaaaaaattcgcgaaggtcgaatc
tttgtcgattaccttagaaactctcaaggagccacggctgttgcgccatattcacttcgc
gctcgagcgatcagtgctgtagccatgcctgtgacgtggaatgatctaaaaaagattccc
ggcggagattactatgatttgaaaaaagccctagctcaccttcaacggcggcgcagtgat
ccatggcaaggttatttaaaacttcaacaacgaattgcactcttggaaaaagcgaccact
aaaaaaagctctaccaggtctcaagcgcatttatga

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