Betaproteobacteria bacterium GR16-43: BWI17_11510
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Entry
BWI17_11510 CDS
T04726
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
beba
Betaproteobacteria bacterium GR16-43
Pathway
beba03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
beba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BWI17_11510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
beba03400
]
BWI17_11510
Enzymes [BR:
beba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BWI17_11510
DNA repair and recombination proteins [BR:
beba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BWI17_11510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Urocanase_C
Motif
Other DBs
NCBI-ProteinID:
APV50262
UniProt:
A0A1P8FJH2
LinkDB
All DBs
Position
complement(2328961..2331705)
Genome browser
AA seq
914 aa
AA seq
DB search
MAKDSLKEYGAKRTFTATPEPAPVLATGRGGPLLFVVQQHRASRLHYDFRLECDGVLKSW
AVPKGPSLDTNEKRLAVQTEDHPFGYASFEGVIPPGQYGAGEVIVWDCGVYSPDEGGTWY
HDREGAEREVLDGLAKGKLSFTLRGEKLKGSFALVKTKEAKQWLLIKHRDRFVTADDVTQ
RNRSVLSGIAVSEMKTVPAGKRLPAVQLVPNGEVVPMPAPAKLAPMLAESGDKPFNKPDW
MWEPKLDGYRVLAFIGEDGVKLRSRRGLDYAATFPALASELGKQQAVNGMVLDGEIVAFG
ADGRPSFGALQERAQLKTASEIAAADRDIPIVFFAFDMPWFAGIDLRAVPYRERRRYLAQ
CILPSPRVQLVHAVDDGLALHEAAIAAGFEGVIGKRKESRYEAGKRSQSWVKVKPTHTGD
FVIGGYTKGKGSRGDLGALIVGYWEGKSLRFASGVGSGFDDRTLAAVRARLKPLERKTMP
FSEKPELMNGGVPVWVEPEIVAEVEFQNWTDDGHLRAPVFLRLRDDLDAKKVKKPEFRVS
TLTDGNSTDNVLTLNSDPAIDLVVAQLEGKQKEMMLVVGKDRIKVTNLDRVYWPEDKALK
QPALTKRDLLRYFAGISPYILPHLRDRPLTMIRMPDGINGQRFFQKHWEQERPAFVEKIS
VFSGSKDEQHEYLLCNNLPTLLWLAQSGTLEFHVWHSRSNPGLDAKMQASDFDSSLEALE
SSVLNYPDYVVFDLDPYIYSGQEAKGAEPELNTVAFEKGKEVAFWLKELLNSMSLNPIVK
TSGKTGLHIFVPIKRTIDFDAARHVSELVGRHLMRQHPKDITLEWSIPKRTGKIFMDYNM
NVRGKTLNVAYSPRGAPGAPVSMPLTWEELANAHPLDFRLTNAVERLSQTGDRWHDALTI
KQSLERALKKSGSG
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagacagcctgaaggaatacggcgccaagcgcaccttcaccgcgacccccgag
cccgcaccggtcctggccacggggcgcggcggcccgctcctcttcgtcgtgcagcagcat
cgcgcgtcacggcttcactacgacttccgcctcgagtgcgacggcgtgctcaagtcgtgg
gccgtccccaagggaccgtccctcgacactaacgagaagcgcctcgccgtgcaaacggaa
gaccatccgtttggttacgcttccttcgagggcgtgatcccgcccggccagtacggcgcc
ggcgaggtgatcgtgtgggactgcggcgtgtactcgcccgacgaaggcggcacctggtac
cacgatcgcgaaggcgccgagcgcgaggtgctcgacgggctcgcgaaagggaagttgtcc
ttcacgctgcgtggggaaaaattgaaaggctccttcgccctcgtgaagacgaaggaagcc
aagcagtggctgctgatcaagcaccgggatcgtttcgtgacggcggacgacgtgacgcag
cgcaaccgctccgtgctctccggcatcgccgtgtccgagatgaagaccgtgcccgcgggc
aagcgcctgcccgccgtgcagctggttcccaatggcgaggtcgttcccatgccggccccc
gcgaagctcgcgccgatgctcgcggaatccggcgacaagcccttcaacaagcccgactgg
atgtgggagccgaagctcgacggctatcgcgtgctcgccttcatcggcgaggatggcgtg
aagctccgctcgcgccgcggtctcgactacgcagcgacctttcccgcgctcgcatccgag
ctcggcaagcagcaagcggtgaacggcatggtcctcgacggcgagatcgtcgcgttcggc
gccgacgggcgtccgtcgttcggtgcattgcaggaacgcgcgcaactgaagaccgcgagc
gagatcgccgcggccgatcgcgacatcccgatcgtgttcttcgcgttcgacatgccctgg
ttcgcgggcatcgacctgcgggccgtgccgtatcgcgagcgccgccgctatctcgcgcaa
tgcatcctgccctcgccgcgcgtgcagctcgtgcacgccgtggacgacggcctggccctc
cacgaggcggccatcgccgcgggcttcgagggcgtgatcggcaagcggaaggaaagccgc
tacgaggcgggcaagcgctcgcagtcgtgggtgaaggtgaagcccacgcacacgggcgac
ttcgtgattggcggttacaccaaaggcaagggttcgcgcggcgacctgggcgcgctcatc
gtcggttactgggagggcaagtcgctgcgcttcgcctcgggcgtgggctccggctttgat
gaccgcaccctcgctgccgtgcgtgcgcgcctcaagccgctcgaacgcaagacgatgccc
ttctccgagaaaccggagctgatgaacggcggagttccggtctgggtggagcctgagatc
gtggccgaagtcgaattccagaactggaccgacgacggccacctgcgcgcgcccgtcttc
ctccgcctgcgcgacgacctcgacgcgaaaaaagtcaagaagcccgagtttagggtcagc
acgttaactgacggaaattcgacagataacgtgctgaccctaaactccgatcctgcgatc
gatctcgttgtcgcgcagttggaggggaagcagaaggagatgatgctggtcgtcgggaag
gaccgcatcaaggtcaccaacctcgaccgcgtgtactggcccgaggacaaggcgctcaag
cagcccgcgcttaccaagcgcgacctcctgcgctacttcgcgggcatttcgccgtacatc
ctgccgcacctgcgcgaccggccgctcacgatgatccgcatgcccgacggcatcaacggc
cagcggttcttccagaaacattgggagcaggaacgccccgcgttcgtggaaaaaatcagc
gtgttctcggggagcaaggacgagcagcacgaatacctcttgtgcaacaacctgccgacg
ctgctgtggctcgcacagtcgggcacgctcgaattccacgtgtggcattcgcgttccaac
ccgggcctggacgcgaagatgcaggcctccgatttcgattcctcgctcgaggcgctggaa
agctccgtcctcaactatcccgactacgtcgtgttcgacctcgatccctacatctactcg
ggccaggaggcgaagggcgcggagcccgagctgaacacggtcgcgttcgagaagggcaag
gaggttgccttctggttgaaggagttgctgaactcgatgtcgctgaacccgatcgtcaag
acctcgggcaagacgggcctgcacatcttcgtgccgatcaagcggacgatcgacttcgat
gccgcgcgccatgtatcggagctggtcgggcggcacctcatgcgccagcacccgaaggac
atcacgctcgaatggagcattcccaagcgtaccggcaagatcttcatggactacaacatg
aacgttcgcggcaagacgctgaacgtcgcctactccccgcgcggcgctccgggtgcgccg
gtctcgatgccgctcacctgggaagaactcgccaacgcgcatccgctcgacttccgcctc
accaacgcggtcgaacgcctctcgcagaccggcgaccggtggcacgacgccctcaccatc
aagcaaagcctcgagcgagcgttgaagaaatcggggtcagggtag
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