Bradyrhizobium elkanii: BE61_34470
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Entry
BE61_34470 CDS
T07520
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bel
Bradyrhizobium elkanii
Pathway
bel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BE61_34470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bel03400
]
BE61_34470
Enzymes [BR:
bel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BE61_34470
DNA repair and recombination proteins [BR:
bel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BE61_34470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
BBB98011
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All DBs
Position
3546200..3548839
Genome browser
AA seq
879 aa
AA seq
DB search
MSLRNLSTYRKKRDFEKTSEPSGDVKVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSW
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRGTWESDDPERGF
RKGDLKFTLEGDKLHGSWVLVRMKGDRFGGKRTNWLLIKHRDEYAVDGNGEEILDEDRSV
ASGRSMAQIAAGKGRAPKPFMLAKGNGKAKADAVWQSNHGMAADARARTKAPAPKERLKV
ARQAKPKQVSEMPDFVAPQLCRAVEAPPGGAGWCHEIKFDGYRVQLRVEDGEAVLKTRKG
LDWTAKFGAIVKEAEKLPNALIDGEIVALDKYGTPHFSTLQAALSDGQTDRLIFYAFDLL
FAGTEDLRPLPLIERKARLKKLLAVRKNNPLIRYVEHFEESGETVLDSARKLDLEGIVSK
RLDRPYRSGRSDDWTKAKVRAGHEVVLGGWKTTNGKFRSLMAGVYRGDHLAFVGIVGTGF
GQDTVRRIMPALKAAEADKSPFGGKDAPKKTRDVHWLKPELVAEIEFAGWTDAGNIRQAA
FKGLRQDKPAHEVVAERPVVTKVVKPMAKGVAKKGTGKASSEVMGVVISHPDKALWPDAG
DGEPVTKLDLANYFEAVGEWMISYLKGRPCSIVRAPDGIKGETFFQRHAMAGTSKLLKLA
KVSGDRKPYLQIDQVEGLAAVAQAGGLELHPWNCAPDAYDTPGRLVFDLDPAPDVAFADV
IDAAKDMRQRLTAVGLESFCKTTGGKGLHVVAPLLAGSRDKVTWKEAKAFAQAVCQWMAQ
DDPERYLINMSKAKRTGKIFLDYLRNDRMSTAVAVLSPRARPGATVSMPLTWPQLRGDLD
PKKFTLRTVPALLAKTKAWDGYEDAASSIKSAMKKLAAQ
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgctgagaaacctgtccacctatcgcaagaagcgcgacttcgagaagaccagcgag
ccgtcgggcgacgtcaaggtcgcacccagcaagcagcggcgcttcgtcatccagaagcac
gacgcgacgcggctgcattacgatctgaggctcgaattcgacggcgtcttcaagtcctgg
gcggtgacgcgcgggccgtcgctcgatccgcatgacaagcggctggcggtggaggtcgag
gatcatccgctcgactatggcgatttcgaaggcaccattcccgaaggccagtatggcggc
ggcacggtgcagctgtgggatcgcggcacctgggaatcggacgatcccgagcgcggcttc
aggaagggcgacctgaagttcacgctcgagggcgacaagctgcacggcagctgggtgctg
gtgcggatgaagggggaccgctttggcggcaagcgcaccaactggctcctgatcaagcac
cgcgacgaatatgccgttgacggcaacggcgaggagatcctcgacgaggaccgttcggtc
gcctccggacgctcgatggcgcagatcgcggccggcaagggccgggcgccgaagccgttc
atgctggccaagggcaacggcaaggccaaagctgacgcggtctggcagtccaaccacggc
atggccgcggacgcgcgtgccaggaccaaggcgcctgcgcccaaggagcggctgaaagtg
gcgcggcaggcgaaaccgaagcaggtatcggagatgcctgatttcgtcgcgccacagctg
tgccgggccgtcgaagcgccgcccggcggcgccggctggtgccatgagatcaagttcgac
ggctaccgcgtgcagctccgtgtcgaagacggcgaggccgtgctgaagacgcgcaagggg
ctcgactggaccgccaagttcggcgcgatcgtgaaggaggcggagaagctgcccaacgcg
ctgatcgatggcgagatcgtcgcgctcgacaagtacggcacgccgcatttttcgactctg
caggccgcgctctccgacggccagacggatcggctgatcttctacgcgttcgacctgctg
ttcgccggtaccgaagatcttcgcccgctgccgctcatcgagcgcaaggcgcggctgaag
aagctgctcgccgtgcgcaagaataaccctttgatccgctacgtcgagcatttcgaggaa
agcggcgagaccgtgctggattcggcccgcaagctcgacctcgaaggcatcgtctccaag
cggctggacaggccctaccgctccggccggtcggatgattggaccaaggcgaaggttcgc
gccggccatgaggtggtgctcggcggctggaagaccaccaacggcaaattccgctcgctg
atggcgggcgtctatcgcggcgatcatctggcgtttgtcggcatcgtcggcaccggcttc
ggccaggataccgtccgccgcatcatgccggcgctgaaggcggcggaggcggacaagagc
ccgttcggcggcaaggacgcgccgaagaagacccgcgacgtgcactggctgaagccggag
ctggtcgccgaaatcgagttcgccggctggaccgatgccggaaatatccgccaggccgcc
ttcaagggcctgcgccaggacaagccggcgcacgaggtcgtggccgagcggccggttgta
accaaagtggtgaagccgatggccaagggcgtggcgaagaagggcaccgggaaggcgtcc
agcgaggtgatgggcgtcgtcatctcgcatccggacaaggcgctgtggcctgatgcgggc
gatggcgagccggtgaccaagctcgacctcgccaactatttcgaggcggtcggcgaatgg
atgatctcctatctcaaaggtcggccgtgctcgatcgtgcgtgcgcccgacggcatcaag
ggcgagaccttcttccagcgtcatgcgatggccggcacgtcgaaactgctcaagcttgcg
aaggtctcgggcgaccgcaaaccctatctgcagatcgaccaggtcgagggcctggcggcg
gttgcgcaggccggcggcctcgaactgcatccctggaattgcgcgcccgatgcctatgac
acgccgggccggctggtgttcgatctcgatcccgcgcccgatgtcgcgttcgccgacgtg
atcgacgccgccaaggacatgcggcagcggctgaccgcggtcggcctcgaaagcttctgc
aagaccaccggcggcaaggggctgcacgtcgtcgcaccgctgctcgcaggcagcagggac
aaggtgacgtggaaggaggccaaggcgttcgcgcaggcggtctgccagtggatggcccag
gacgatcccgagcgctatctgatcaacatgtccaaggccaagcgcacgggaaagatcttc
ctcgactatttgcgcaacgacaggatgtcgacggcggtcgcggtgttgtcgccgcgggcg
cgtccgggagcgacggtgtcgatgccgttgacctggccgcagctgcgcggtgatctcgat
ccgaagaaattcacgctacgcaccgtgccggccttgctcgccaagacgaaagcctgggat
ggctacgaggacgcagcgtcgtcgatcaagtcggcgatgaagaagctcgcggcgcagtag
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