Bacteroides fragilis 638R: BF638R_1564
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Entry
BF638R_1564 CDS
T01691
Symbol
rne
Name
(GenBank) putative ribonuclease E
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
bfg
Bacteroides fragilis 638R
Brite
KEGG Orthology (KO) [BR:
bfg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfg03019
]
BF638R_1564 (rne)
03009 Ribosome biogenesis [BR:
bfg03009
]
BF638R_1564 (rne)
Messenger RNA biogenesis [BR:
bfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BF638R_1564 (rne)
Ribosome biogenesis [BR:
bfg03009
]
Prokaryotic type
rRNA processing factors
BF638R_1564 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
DUF6305
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
CBW22099
UniProt:
E1WTE5
LinkDB
All DBs
Position
complement(1828963..1830537)
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AA seq
524 aa
AA seq
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MTSELVVDVQPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVDV
GYEKDAFLHYLDLGPQFNSLEKYVKQTLSDKKKLNPISKATLLPDLDKDGTVANTLKVGQ
EVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLMSI
KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEESITKVQKATKFPTLIYEETSRAVALL
RDLFNPSFENIYVNNEAVFNEIRDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF
GKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRLRD
MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV
NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYVAAYLNQGLMSL
KRKWQMKYGFGIKIIPSQKLAFLEYVFYDSHGEEIDMKEEFEIK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
gtgacaagcgaactagtagtagacgtacagcccaaagaagtatccatcgccctacttgag
gacaagagtctggtggaacttcaaagcgaaggaagaaatatttctttttcggtgggcaat
atgtatttaggccgtgtcaagaaattgatgcccggactgaatgcttgcttcgtggatgtc
ggttatgagaaagatgctttccttcattatttagacctgggtcctcaatttaactcactc
gaaaagtacgtaaagcagactttaagcgacaaaaaaaagcttaatcccatttcgaaagca
accctgcttcccgaccttgacaaggatggcactgtagccaatacattaaaggtaggacaa
gaagtagtggtgcaaatcgtaaaggaacctatctctaccaagggaccacgcctgacttcc
gaaatctcgtttgcaggaagatatctggtactgattccttttaatgataaggtttccgtt
tctcaaaaaattaaatcgagcgaagaacgtgcgcgcctgaaacagttactgatgagcatc
aaaccgaaaaacttcggagtgatcgtacgcacagtggcagaaggcaaacgtgttgccgaa
ctcgacggagagcttaaagtattgctgaagcactgggaagaaagtatcaccaaggtacaa
aaggctacaaagtttcctacactgatttatgaggaaaccagccgtgccgtagccttgtta
cgcgaccttttcaatccctcgttcgaaaatatctacgtcaacaacgaagcggtattcaac
gaaatcagggattatgtgacactgattgcccccgaacgggcaggcattgtcaaattatac
aaaggtcagcttcccatttatgacaattttggtatcaccaaacagattaaatcgtctttt
ggtaaaacagtatcctacaagagtggtgcctacctgattattgagcacactgaggcgctt
cacgtagtagacgtgaacagcggtaaccgcaccaagaatgccaacggacaggaaggtaat
gcactcgaagttaacctgggagctgccgatgagttggcacgccagttaagactaagggat
atgggtggtatcattgtggtggatttcatcgacatgaatgaagccgaaaatcgtcagaag
ctttacgaacgtatgtgtgccaatatgcaaaaagacagggcgcgtcacaacattctgccc
ttaagcaaattcggactgatgcaaattacacgccaacgggttcgcccggccatggacgtg
aacactacagaaacctgtccgacttgctttggtaaaggcaccatcaaatcgtccatcctc
tttacggacacactggagagtaaaattgattatctggtcaataaactgaagataaagaaa
ttctcactgcacatccacccgtatgtggctgcttatttgaatcagggacttatgtcgctg
aaacgtaaatggcagatgaaatacggatttggtattaaaattattccgagtcagaaactc
gcttttcttgaatacgtattctacgattcacatggagaagagatcgatatgaaggaagaa
tttgagattaaataa
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