Paraburkholderia fungorum: OI25_3429
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Entry
OI25_3429 CDS
T03799
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bfn
Paraburkholderia fungorum
Pathway
bfn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OI25_3429 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfn03400
]
OI25_3429 (ligD)
Enzymes [BR:
bfn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OI25_3429 (ligD)
DNA repair and recombination proteins [BR:
bfn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OI25_3429 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AJZ57787
LinkDB
All DBs
Position
1:3843198..3845963
Genome browser
AA seq
921 aa
AA seq
DB search
MKDRLDLYNRKRRFDETPEPPGAAARKKGRGTAARASNEALAYVIQEHHARRLHYDFRLE
LNGTLLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGSFEGEIPPGHYGAGTVIVWDRGTWE
PNGGAAQAARSYQAGKLKFHLHGEKLHGGWTLVRSHMRGSGDKEQWLLIKERDDEARSEN
EYDVVTALPGSVLNGSAPTEGRPGPGGRAKKTKTATKTATKTATKTATKTATKTPSESAN
GNASASRKARTTQAIIASPSIEGAVKAALPATFKPQLATLVDTAPPGDEWAYEIKFDGYR
VLARIDRKAKTRAVKVFTRAGNDWTAKFGEQVKAFEQLDIESGWLDGEAVVLDENGLPNF
QALQNAFDSNRPQDIVIYLFDVPFLNGYDLRNVPLEQRRAILRAVMDKHDKDKHNGDKHD
GGVLRFSNDFAFSADELLKSACDVALEGIIGKRRDSGYVSGRSSAWIKLKCRRRQEFVIG
GYSEPSGSRAAFGALLLGIYDDAGKLRYAGRVGTGFDAALLASVKKALDAHETRHMPFAS
APRERSRSPVHWVEPVLVCECNFAEWTSDGIVRQASFVSLRNDKPARQIIKEDPRQGADV
QERTDAASETVPKKRTSKSKNAAAPAEVAGVRVSHPDRIIDKSTGARKIDLVHYYESVAD
WMLPHLHDRPVSLVRAPKDIGGELFFQKHSQKLSIPNVTQHPGLDPGHPPLITVDTLKAL
VGAAQMGTVEFHTWNALVSNIEKPDRMVFDLDPDASLGWERMIEAAQLTRSLLEELGLTS
FCKTSGGKGFHVVVPLAKHAGWDDVKAFAQAVAQHMAATLPTHFSAKMGAQNRKGKIFVD
YLRNNRGSSTVAAFSARARPGLGVSVPLAWDEVATTTSGDQWTIENVHERLKDLKRDPWA
DYAKTRQRITAAMKKRLDEAQ
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaccggctcgatctgtacaaccgcaagcggcgcttcgacgaaactccggagccg
ccgggcgccgctgcgcgcaagaagggtcgcgggacggcggcgcgcgcatcgaacgaggcg
ttggcgtatgtgattcaggagcaccacgcacggcgcctgcactacgacttccggctcgaa
ctgaatggcaccttgctgtcgtgggcggtgcccaaggggccgagcctcgacccgtcggtg
aagcggctcgcggtgcatgtcgaggatcatccagtcgaatatggctcgttcgaaggcgag
attccgccggggcactacggtgcgggaacggtgatcgtatgggaccggggaacgtgggag
ccgaacggcggcgcagcgcaagccgccaggtcgtatcaggcgggcaagctcaaattccat
ctccacggcgaaaaactacacggcggctggacgctggtgcgcagccacatgcgcggaagc
ggcgacaaggagcagtggctgctgatcaaggagcgcgacgacgaagcccgtagcgagaat
gaatacgacgtcgtaacggcgctgccaggcagcgtattgaacggcagcgcgccaactgaa
gggcggcccggacccggcgggcgcgcgaagaaaacgaagaccgcaacgaagaccgcaacg
aagaccgcaacgaagaccgcaacgaagaccgcaacgaagaccccaagcgagtctgcaaac
gggaacgcaagcgcaagcaggaaggcgcgcacaacgcaggcgattatcgcttccccttcg
atcgaaggcgcggtcaaagccgcgttacccgccacgttcaagccgcaactggcgacgctc
gtcgacaccgcgccacccggcgacgaatgggcctacgaaatcaagttcgacggttatcgc
gtgctagcccgcatcgatcgaaaagcgaagacccgtgcggtcaaggtgttcacgcgcgcg
ggcaacgactggaccgcgaagttcggcgagcaggtgaaggcgttcgaacaactcgacatc
gaaagcggctggctcgacggtgaagccgtggtgctcgatgaaaacggtctgccgaatttt
caggcgctgcagaacgcgtttgattcgaaccgtccgcaagacattgtgatctatctgttc
gacgttccgtttctgaacggctacgacttgcgcaatgtgccgctcgaacagcgtcgcgcg
attttgcgtgcggtaatggataagcacgacaaggataagcataacggggacaagcacgac
ggcggcgtgcttcgcttctccaacgacttcgcgttcagtgccgacgaactattgaagagc
gcgtgcgacgtagcgctcgaagggattatcggcaaacggcgcgatagcggctacgtgtcg
ggacgctcgtccgcgtggatcaaattgaagtgccggcggcgccaggagttcgtgatcggc
ggctattcggagccgtccggcagccgtgcggcgttcggcgcgttattgctcggcatctac
gacgacgcgggcaaattgcgctacgcaggacgcgtcggcacagggttcgacgctgcactg
ctggcctcggtcaaaaaggcgctcgacgcgcacgagaccaggcatatgccgtttgccagc
gcgccgcgcgagcgcagccgctcgccggtgcactgggtcgaaccggtgctcgtctgcgaa
tgcaacttcgctgaatggacgagcgacggcatcgtgcggcaggcatcgttcgtgagtctg
cgtaacgacaaaccggcacggcaaatcatcaaggaagatcctcgtcaaggagccgacgtg
caagagcgaaccgatgccgcatccgaaaccgtgccgaagaagcgcacgtcgaaatcaaag
aatgccgcggcaccagccgaagtcgccggcgtgcgcgtctcgcatcccgaccgcatcatc
gataagagcaccggcgcccggaaaatcgatctcgtgcactactacgaatcggtcgccgac
tggatgctgccgcatctgcatgaccggccggtatcgctggtgcgcgcgcctaaggacatc
ggcggcgaactgtttttccagaagcacagccagaaactgtcgatccccaacgtcacgcag
catcccgggctcgaccccggccatccgccgctgatcacggtcgacacacttaaggcgctg
gtcggcgccgcccaaatgggtaccgttgaatttcatacctggaatgcgttggtgtcgaac
atcgaaaaaccggatcgcatggtgttcgatctcgaccccgacgcgtcgctcgggtgggag
cggatgatcgaagccgcgcaactgacgcgttcactgctcgaagagctcggactgacctcg
ttctgcaagacgagcggcggcaaaggtttccacgtggtggtgccgctcgcgaagcacgcc
ggctgggacgatgtaaaagcgtttgcgcaagcggtcgcacaacatatggcagcgacgttg
cccacgcatttcagcgcgaagatgggggcgcagaatcgcaaggggaagatctttgtcgat
tacctgcgcaacaaccgcggctcgagcacggtagctgctttctcggcacgcgcccggccg
gggctgggggtctcggtgccgcttgcatgggacgaagtcgcgaccacgacgagcggcgat
cagtggaccatcgaaaacgttcacgaacggctcaaggatctgaagcgcgacccgtgggcg
gactacgcgaagacgcgccagcgcattacggcggcaatgaaaaaacgtctggatgaagcg
cagtga
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