Branchiostoma floridae (Florida lancelet): 118412404
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Entry
118412404 CDS
T01074
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118412404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfo03041
]
118412404
Enzymes [BR:
bfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118412404
Spliceosome [BR:
bfo03041
]
Complex A
U2 snRNP components
U2 related factors
118412404
Complex B
118412404
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
118412404
NCBI-ProteinID:
XP_035671137
UniProt:
A0A9J7KVE3
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Position
3:complement(25418246..25437533)
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AA seq
1283 aa
AA seq
DB search
MPRETRHYRKRSRSSSGSPSPSKSPVPTKSEEKSKRKKDKERSKSRRSRSRSRDRKSSRS
PGRDGKSRKKSRSPSRGDKEAKSPPKEHRAAKWPRSPSRRRRRSSGSPGTSRSRRKSRSP
SFERKRTPVKVKEEKKSPRRSQSKERKKSSSPSAAMVTKSRSKSPAADEKASSRSPSPQK
TRSKSPRKKSRSKSPVKSKKSRTPSPDGTKKSRSRSPGKRKRSTSPVGRKKRSKSRSPSP
AVRRKRSRSRSRDRDRKRSRLGKKSPPKVISLRDLRRSRSRSPLRRRLSPIRRSPRRRRS
RSRSKGRRSPIRRRSRSPRHKSRHSRSRSRSKSPKKEEKVKEEKEEVLDKDAEQKRLEEE
MIRRRERVEKWRQERKKQEDLQRAQEAAQEEAAKIGKKWSLEDDEDDSEEDEQPMETNDD
DDDDDDDDDEAAKVKKEAEDDDDEIDPLDAFMNDIKEEVKQINKKDQERVGKVYSSDTTN
GSQDEEDTPLPPALRQDATGSHANKQMETKGKVTVITAVAKKTGKREARGELIEQNQDAL
EWSSEEEEEDLGQTLSSFQSKAKKLLASVDHTQIEYDPFRKDFYVEVPELQKLSEDEVKG
MRAEMEDVRVKGKGCPKPVLHWVQSGVSKKVLACLKKHGFEKPTPIQAQAIPVIMSGRDM
IGIAKTGSGKTLAFLIPMFRHILDQRPLEDTEGPIGVIMTPTRELALQITKECKKFTRHM
NLKVVCVYGGTGISEQIAELKRGAEIIICTPGRMIDMLAANNGRVTNLRRCTYLVLDEAD
RMFDMGFEPQVMHIVNSVRPDRQTVMFSATFPRNMEALARKVLQKPIEVQVGGRSVVCSD
VEQHVIVLEEEQKFFKLLELLGNYQEKGSVLVFVERQEVADTLLKDLLKAAYSCLSLHGG
IDQYDRDSIINDFKSGNIRLLVATSVAARGLDVKQLILVINYDCPNHYEDYVHRVGRTGR
AGNKGYAYTFITEDQGRYAGDVIKALELSERPVPEEVLNLWTEYVNRQKAEGKAVKKTSG
FTGKGFKFDETEQALADERRKLQKAALGLQDSDEEDAAVDIDQQIEDMFASKKRVKDVTA
PVANVQTTSQPLELTKTTAEKLELAKRLATRINMQRNLGDQAQDVVQQAASAVMKGEILA
APAVSAKTIAEQMADRINAKLGYTPQASEDTQEEQTNVETFKRYEEELEINDFPQTVRWK
VTSKEALAHIQEYSEAGITVRGTYFPPGKEVKEGERKIYLAIESTNEMSVQKAKAEIKRL
IKEELVRLQNSYQPLNKGRYKVM
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcgaaaccaggcactatcggaagcgatctcgctcctcgagtgggtccccctcc
ccgtccaagtcacctgttccgacaaaaagtgaggagaagagcaaacggaagaaggacaag
gaacggtcaaagagcagacggtccaggtcccgcagccgagacaggaagtcttcccgctca
cctggcagagatggcaagtcacgcaagaagtcaagatctccaagcagaggtgacaaggaa
gcaaagtcaccccccaaggagcacagggctgccaaatggccgaggtccccctccaggaga
agacgtagaagttcagggtcaccaggcacatcaaggtcacggagaaagtccagatctccc
agctttgagcggaagcgcacaccagtgaaggtcaaagaagaaaagaaatccccaagaagg
tcacagagtaaagaaaggaagaagtcttcctccccttctgctgccatggtaacgaagtca
cgatccaagtcaccggccgcagatgagaaggcttcctctcgttcacccagtccacagaag
acgcgatctaaatctcctcgtaagaaatctcgctccaagtctcctgtaaaaagtaaaaaa
tcacgcacgccatcgcctgacggcacaaagaagtcacgatcaagatcgccagggaagagg
aagaggtcaacctccccggtcggtaggaagaagcggtccaagagtcggtccccatctccc
gctgtccgaaggaagaggtcacggtcaaggtcacgcgacagggacaggaaaagaagcaga
ctgggtaagaagtccccccccaaagtcatctccctgcgtgacctgaggcgctcccgcagc
aggagtcccctccgcaggagactcagcccgatccgccgcagtccccgcagacgcaggagc
cgcagtcgcagcaagggtcggaggtcgcccatcagaagacggtctcgcagtcctcgccac
aagtcccgccactctcgctcccgttctcgatccaagtcacccaagaaggaagagaaagtg
aaggaagagaaagaggaggtcctagacaaggatgcagagcagaaacgtctggaggaggag
atgatccgtcggcgtgagcgggtggagaagtggagacaggagaggaagaagcaggaggat
ctgcagcgggcacaggaggcagcgcaggaggaggctgctaagattggtaagaagtggagt
cttgaagatgatgaggatgacagtgaagaagatgagcagcccatggagaccaacgatgat
gacgatgatgatgatgatgatgatgatgaagccgccaaggtgaagaaggaggctgaagat
gatgatgatgagatcgaccccctggatgccttcatgaatgacatcaaagaggaggtgaag
cagataaacaagaaggaccaggagcgggtcgggaaggtctacagctctgacacaaccaat
ggatcacaggatgaagaagacacgcccctccccccggcactgcgacaggacgccaccggg
agccatgccaacaaacaaatggagacaaagggaaaggtgacggtgatcacagccgtggcg
aagaagacggggaagagggaagccaggggagagctgatcgaacagaaccaggacgcgctg
gagtggtcctctgaggaggaggaggaggatctcgggcagactctctctagtttccagtca
aaggccaagaagctgctggccagtgtggaccacacccagatagagtacgaccccttcagg
aaggacttctatgtggaggtgccggaactgcagaagctcagcgaggacgaggtcaagggc
atgagagctgagatggaggatgtcagggtaaaagggaagggctgccctaagcccgtcctc
cattgggtacagagtggcgtctccaagaaggttctggcatgtcttaagaaacacggcttt
gagaagccgacgcccatccaggcccaggccatccctgtgatcatgtcggggcgagacatg
attggcatcgcgaagacgggcagcgggaagacgctcgctttcctcatccccatgttccgc
cacatcctggaccagcggccactggaggacactgagggacccataggggtgattatgaca
ccaaccagagaactggccctgcagatcaccaaggagtgtaagaagttcactcgacacatg
aacctgaaggtggtgtgtgtgtacggagggaccggcatcagcgaacagattgctgagttg
aagagaggtgcagagatcatcatctgtacccctgggcgcatgatcgacatgctggcagcc
aacaatggccgagtcacgaacctccgccgctgtacatatctggtgttggacgaggctgac
agaatgtttgacatgggatttgaaccacaggtgatgcacatagtgaacagcgtccgtccg
gacagacagaccgtgatgttttctgccacgtttcctcgcaacatggaggcgctcgctcgc
aaggtcctgcagaaacccatcgaggtacaggtcggaggtcgcagcgtggtctgcagtgat
gtggagcagcatgtgattgttcttgaggaggagcagaagttctttaagttgctggagctg
cttgggaactaccaggagaagggaagtgtgctggtgtttgtggagagacaggaggtggca
gacaccctgctcaaggacctgctgaaggcagcgtactcctgtctgtcactacacggaggt
attgaccagtatgacagagacagtatcatcaatgactttaagtctggcaacattcgactc
ctggtggcgacgtcggtggcagctcgaggcctggacgtcaaacagcttatcctagtcatc
aactacgactgcccaaaccactacgaggactacgtacacagagtgggacggacaggcaga
gcagggaacaagggttatgcctacacgttcataacagaagaccagggccggtacgccgga
gatgtcatcaaagcgctggagctgtcagagagacccgtgccggaggaggtgctcaacctg
tggaccgagtacgtcaacagacaaaaagctgaaggaaaggcagtgaagaagaccagtggt
tttaccgggaagggcttcaagtttgatgagacagaacaggcgctggcggacgagaggaga
aaactgcagaaggctgcgctgggtctgcaggactcagatgaggaggatgcagctgtagat
attgaccagcagatcgaggacatgtttgcatccaagaagcgagttaaggacgtgacagcg
ccggttgccaatgtccagactaccagccaaccactggagctgaccaagaccactgccgag
aaactggagctggccaaacgactggccacacgcatcaacatgcagaggaacctgggagac
caagcacaggatgttgtgcagcaggctgcctccgctgtgatgaagggagagatccttgca
gcaccagctgtgtctgccaagactatagcagaacagatggctgaccgtatcaacgccaag
ctgggctacactccccaggccagtgaggacacccaggaggagcagacaaatgtggagacc
ttcaaacgctacgaagaggagctggaaatcaacgacttccctcagactgtacgatggaag
gtcacatcaaaggaggcgctagctcacatccaggagtactcagaagctggcatcactgtc
cgtggtacatacttccctcctggtaaggaggtcaaggaaggagagaggaaaatctacctg
gccattgagagtaccaatgagatgtcagtacagaaggcaaaagcagagatcaaacggctg
atcaaggaagagctggtcagactacagaactcctaccaaccactcaacaagggcaggtac
aaggtcatgtag
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integrated database retrieval system
